Browse Element(s) Details


OsAffx.14794.1.S1_at

Description tigr:9633.m02114
TID=OsAffx.14794.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SRF-type transcription factor (DNA-binding and dimerisation domain), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2378011/11SRF-type transcription factor family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23750Os.10827.1.S1_x_at10/115+13566799..13570504transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23750Os.46055.2.S1_x_at5/115+13566799..13570504transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23760NANA5+13571224..13571676hypothetical protein
LOC_Os05g23770OsAffx.25936.1.S1_s_at9/115+13573248..13576286transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23770OsAffx.25936.7.S1_s_at8/115+13573248..13576286transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23770OsAffx.25936.2.S1_x_at6/115+13573248..13576286transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23770OsAffx.25936.5.S1_x_at2/115+13573248..13576286transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23780OsAffx.14794.1.S1_at11/115+13578265..13578921SRF-type transcription factor family protein
LOC_Os05g23790OsAffx.14795.1.S1_at11/115+13585280..13588875retrotransposon, putative, centromere-specific, expressed
LOC_Os05g23800OsAffx.4408.1.S1_at10/115+13590328..13594018RNA recognition motif family protein
LOC_Os05g23810OsAffx.30487.1.S1_at3/115+13603340..13608640retrotransposon protein, putative, unclassified
LOC_Os05g23810Os.5711.1.S1_at2/115+13603340..13608640retrotransposon protein, putative, unclassified
LOC_Os05g23810OsAffx.30488.1.S1_at1/115+13603340..13608640retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14794.1.S1_at--858--651Chr05:13578833..13578857 (25 bp)
ATGCACGTGACGTTTGCTTCTCGAA
LOC_Os05g23780
OsAffx.14794.1.S1_at--552--5391Chr05:13578811..13578835 (25 bp)
GAAGCGTCGCCAAACCCTATTTAAT
LOC_Os05g23780
OsAffx.14794.1.S1_at--282--4731Chr05:13578783..13578807 (25 bp)
GCTGGTGAGCTTTCATTGCTATGTA
LOC_Os05g23780
OsAffx.14794.1.S1_at--214--3871Chr05:13578743..13578767 (25 bp)
CTGTTGTGATTTCTCCTGCTGGTAG
LOC_Os05g23780
OsAffx.14794.1.S1_at--647--3871Chr05:13578695..13578719 (25 bp)
CTGTTGATGATGTTGCTGACCGCTT
LOC_Os05g23780
OsAffx.14794.1.S1_at--240--4311Chr05:13578640..13578664 (25 bp)
CCATTCCTTGGGTGGTGGGTACCAT
LOC_Os05g23780
OsAffx.14794.1.S1_at--653--8131Chr05:13578492..13578516 (25 bp)
GGACATCTTATGCAATCACTGACTT
LOC_Os05g23780
OsAffx.14794.1.S1_at--155--8951Chr05:13578473..13578497 (25 bp)
TGACTTCTGAAGTTAATCTCCTGGG
LOC_Os05g23780
OsAffx.14794.1.S1_at--855--9511Chr05:13578409..13578433 (25 bp)
TCTACCTTACACTTCCATTGCAAAG
LOC_Os05g23780
OsAffx.14794.1.S1_at--9--7011Chr05:13578356..13578380 (25 bp)
GTACTAGAATGCCATTGCCACAGCC
LOC_Os05g23780
OsAffx.14794.1.S1_at--703--10751Chr05:13578296..13578320 (25 bp)
TTGAAGAGCAGGCTGTCACACCCGC
LOC_Os05g23780
Target Sequence 
ATGCACGTGACGTTTGCTTCTCGAAGCGTCGCCAAACCCTATTTAATAAAGCTGGTGAGCTTTCATTGCTATGTAATGCA
AATATAGCTGCTGTTGTGATTTCTCCTGCTGGTAGGGGTTTCTCCTTTGCCCATCCCTCTGTTGATGATGTTGCTGACCG
CTTGGCCTCCATGGCCATGGGCATTCCCAATAACCATTCCTTGGGTGGTGGGTACCATGATAGCGGTGAGGTGACAAACA
TAGCGCAACAGCAGAAAATTGAATATGTGGAGCTCCAAAAGTCATTGGAAAAGTCGGAAAAGAAGAAGAGGGTTCAGGAG
GCAATGGAGAAGGAGAGGGCAGGACATCTTATGCAATCACTGACTTCTGAAGTTAATCTCCTGGGGCAGGATGAATTGGA
GGAGCTGCACAACAAACTCTCAGCTCTACCTTACACTTCCATTGCAAAGTTCTACCAGGTACTGCAAGATGCAAAGGGTA
CTAGAATGCCATTGCCACAGCCACATATTGAAATAGCATGTCAATCACAATTTCTATTTGAAGAGCAGGCTGTCACACCC
GC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14794.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis