Browse Element(s) Details


OsAffx.14807.1.S1_at

Description tigr:9633.m02193
TID=OsAffx.14807.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2457011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g24510NANA5+14068004..14068210hypothetical protein
LOC_Os05g24520OsAffx.22699.1.S1_x_at4/115+14069318..14073927retrotransposon protein, putative, unclassified
LOC_Os05g24530OsAffx.2133.1.S1_at1/115+14074586..14076298hypothetical protein
LOC_Os05g24540OsAffx.27002.1.S1_at11/115+14078275..14078733hypothetical protein
LOC_Os05g24550Os.8744.1.S1_a_at6/115+14083606..14087136Papain family cysteine protease containing protein, expressed
LOC_Os05g24560NANA5+14087688..14090121NC domain-containing protein, putative, expressed
LOC_Os05g24570OsAffx.14807.1.S1_at11/115+14092869..14093741hypothetical protein
LOC_Os05g24580NANA5+14095652..14100295hypothetical protein
LOC_Os05g24594Os.7223.1.S1_at11/115+14103338..14119202Coatomer delta subunit, putative, expressed
LOC_Os05g24594Os.9802.1.S1_at11/115+14103338..14119202Coatomer delta subunit, putative, expressed
LOC_Os05g24594OsAffx.1755.1.S1_at2/115+14103338..14119202Coatomer delta subunit, putative, expressed
LOC_Os05g24594OsAffx.1755.1.S1_x_at2/115+14103338..14119202Coatomer delta subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14807.1.S1_at--1073--1411Chr05:14093626..14093650 (25 bp)
AGAAATGTGCCCGGCGGCTGAATGC
LOC_Os05g24570
OsAffx.14807.1.S1_at--608--4691Chr05:14093363..14093588 (25 bp)
GCGGCACCTGAGTGGTTTCACCTGA
LOC_Os05g24570
OsAffx.14807.1.S1_at--669--1091Chr05:14093353..14093377 (25 bp)
AGTGGTTTCACCTGAAGCCTACTTA
LOC_Os05g24570
OsAffx.14807.1.S1_at--831--5411Chr05:14093340..14093364 (25 bp)
GAAGCCTACTTACTATAATACCCGA
LOC_Os05g24570
OsAffx.14807.1.S1_at--631--4011Chr05:14093176..14093200 (25 bp)
CGTCACCCGCTCTGGCGCGTTGTGG
LOC_Os05g24570
OsAffx.14807.1.S1_at--87--3391Chr05:14093034..14093058 (25 bp)
CAGCCGCAACGCTAAGGAGCGCTTA
LOC_Os05g24570
OsAffx.14807.1.S1_at--766--9771Chr05:14093022..14093046 (25 bp)
TAAGGAGCGCTTAGTGTTCGACCTC
LOC_Os05g24570
OsAffx.14807.1.S1_at--603--5851Chr05:14093018..14093042 (25 bp)
GAGCGCTTAGTGTTCGACCTCCGTG
LOC_Os05g24570
OsAffx.14807.1.S1_at--936--1751Chr05:14093002..14093026 (25 bp)
ACCTCCGTGCCGATCGTTGGAAGGA
LOC_Os05g24570
OsAffx.14807.1.S1_at--195--511Chr05:14092990..14093014 (25 bp)
ATCGTTGGAAGGACATGCCGCCCCG
LOC_Os05g24570
OsAffx.14807.1.S1_at--770--4071Chr05:14092914..14092938 (25 bp)
CGAGACCATCTACGTTTTGGATGAG
LOC_Os05g24570
Target Sequence 
AGAAATGTGCCCGGCGGCTGAATGCGGAGATGCGCGGCATCGGTGACGGCGATGAATCGGCGGCGGCACCTGAGTGGTTT
CACCTGAAGCCTACTTACTATAATACCCGAACAGACAAAAATACCCTTATTTCTACCCTTCTTCCACCTCCGTCGGTGAC
CAGCGGCGCAGGGATAGCTGGTCTGCGGCCGGCGCGGCGCGCGGTCGCGTGTTTGTCACTGGGGGCGTCCGCGCAGGCTA
CGACCCTGCCGTCACCCGCTCTGGCGCGTTGTGGGACCCCGCGGCCTCGCCGCCCACCGCCGCGTGGGAGCCGATCCTGC
CGCTGCGCGACGGGCGGTTCAGCCGCGGAGGCCGTCTGCTCCGGCGGCAAGGTCTGCATGGTCAACCTCCGCAGCCGCAA
CGCTAAGGAGCGCTTAGTGTTCGACCTCCGTGCCGATCGTTGGAAGGACATGCCGCCCCGCATGCTCGCCGGTTGGAAGG
GCCCCGCGGCGGCGTCGCCCCTGGACAACGGCGAGACCATCTACGTTTTGGATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14807.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis