Browse Element(s) Details


OsAffx.14845.1.S1_at

Description tigr:9633.m02453
TID=OsAffx.14845.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=peptide transporter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2705010/11Peptide transporter PTR2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27010Os.17273.1.S1_at11/115+15630952..15632647POT family protein, expressed
LOC_Os05g27010OsAffx.14844.1.S1_s_at11/115+15630952..15632647POT family protein, expressed
LOC_Os05g27020NANA5+15633923..15637255transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27034Os.14491.2.S1_x_at6/115+15639784..15643495transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27034Os.47463.1.S1_x_at5/115+15639784..15643495transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27050OsAffx.14845.1.S1_at10/115+15649520..15651101Peptide transporter PTR2, putative, expressed
LOC_Os05g27060Os.28346.3.S1_x_at10/115+15654616..15660322retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g27080NANA5+15664234..15674286retrotransposon protein, putative, unclassified
LOC_Os05g27090Os.11231.1.S1_at11/115+15674973..15676697expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14845.1.S1_at--884--2731Chr05:15651009..15651033 (25 bp)
AAGAAGAAGCCAAGCAGGAGTTCAC
LOC_Os05g27050
OsAffx.14845.1.S1_at--378--2951Chr05:15650925..15650947 (23 bp)
AAGGCCTGCTCCTTCCTAGTAGGGT
LOC_Os05g27050
OsAffx.14845.1.S1_at--1064--3831Chr05:15650832..15650942 (25 bp)
CTGCTCCTTCCTAGTAGGGTACGAG
LOC_Os05g27050
OsAffx.14845.1.S1_at--606--4311Chr05:15650824..15650934 (25 bp)
TCCTAGTAGGGTACGAGGCGTTCGA
LOC_Os05g27050
OsAffx.14845.1.S1_at--1038--4631Chr05:15650807..15650831 (25 bp)
GCGTTCGAGCGGATGGCGTTCTACG
LOC_Os05g27050
OsAffx.14845.1.S1_at--566--8751Chr05:15650761..15650785 (25 bp)
TGTACCTGACGACGGAGTTGCGGGA
LOC_Os05g27050
OsAffx.14845.1.S1_at--1110--9411Chr05:15650723..15650747 (25 bp)
TCGGTGCGGAACGTGAACAACTGGA
LOC_Os05g27050
OsAffx.14845.1.S1_at--522--5451Chr05:15650715..15650739 (25 bp)
GAACGTGAACAACTGGACGGGCTCC
LOC_Os05g27050
OsAffx.14845.1.S1_at--290--9611NONE
TCATCTACCTCACGTTTCGCTATAG
NONE
OsAffx.14845.1.S1_at--724--3311Chr05:15649562..15649583 (22 bp)
CACGTTTCGCTATAGGTTTAGCCTA
LOC_Os05g27050
OsAffx.14845.1.S1_at--857--8951Chr05:15649550..15649574 (25 bp)
TAGGTTTAGCCTAAAGTCGTCAGTG
LOC_Os05g27050
Target Sequence 
AAGAAGAAGCCAAGCAGGAGTTCACCAAGGACGGCTCCGTCGACCTCCGTGGCCGGCCCGCCGTCGCCGCTCGCACCGGC
CGCTGGAAGGCCTGCTCCTTCCTAGTAGGGTACGAGGCGTTCGAGCGGATGGCGTTCTACGGGGTGGCGGCGAACCTGGT
GGTGTACCTGACGACGGAGTTGCGGGAGGAGACGGTGTCGTCGGTGCGGAACGTGAACAACTGGACGGGCTCCGTCTGGA
TGACCCCCATCGCCGGCGCCTACATCGCCGACGCCTTCCTCGGCCGCTTCTGGACCTTCACCGTCTCCTCCCTCATCTAC
CTCACGTTTCGCTATAGGTTTAGCCTAAAGTCGTCAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14845.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis