Browse Element(s) Details


OsAffx.14890.1.S1_at

Description tigr:9633.m02783
TID=OsAffx.14890.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3063011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g30580Os.52085.1.S1_at11/115+17639694..17642149Subtilisin N-terminal Region family protein, expressed
LOC_Os05g30590NANA5+17643967..17645306hAT family dimerisation domain containing protein
LOC_Os05g30600OsAffx.27087.1.S1_at11/115+17645635..17646478hypothetical protein
LOC_Os05g30610Os.28346.3.S1_x_at8/115+17649421..17655139retrotransposon protein, putative, unclassified
LOC_Os05g30620Os.57089.1.S1_at4/115+17657038..17657532hypothetical protein
LOC_Os05g30630OsAffx.14890.1.S1_at11/115+17661375..17661829hypothetical protein
LOC_Os05g30630OsAffx.15866.1.S1_x_at1/115+17661375..17661829hypothetical protein
LOC_Os05g30640Os.57089.1.S1_at10/115+17670490..17672325expressed protein
LOC_Os05g30650NANA5+17674564..17675954hypothetical protein
LOC_Os05g30660Os.53090.1.S1_at11/115+17675973..17678016expressed protein
LOC_Os05g30670OsAffx.27089.1.S1_at11/115+17680351..17681767hypothetical protein
LOC_Os05g30670OsAffx.25936.5.S1_x_at1/115+17680351..17681767hypothetical protein
LOC_Os05g30680Os.54160.1.S1_at11/115+17684726..17686491exocyst subunit EXO70 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14890.1.S1_at--40--2931Chr05:17661763..17661787 (25 bp)
AAGGAGCGTTGCAGGGTCAACGACA
LOC_Os05g30630
OsAffx.14890.1.S1_at--967--5011Chr05:17661753..17661777 (25 bp)
GCAGGGTCAACGACATGTCCATTGT
LOC_Os05g30630
OsAffx.14890.1.S1_at--1116--2572Chr01:37081897..37081916 (20 bp)
AACGACATGTCCATTGTCAACTGGT
NONE
OsAffx.14890.1.S1_at--781--10811Chr05:17661732..17661756 (25 bp)
TTGTCAACTGGTACAAGCCCGGCAG
LOC_Os05g30630
OsAffx.14890.1.S1_at--572--3831Chr05:17661686..17661710 (25 bp)
CTGCTGGAGCCTACCTCGCCGGAAG
LOC_Os05g30630
OsAffx.14890.1.S1_at--10--5331Chr05:17661665..17661689 (25 bp)
GAAGGTGGTGTCCTCCGATCACCGC
LOC_Os05g30630
OsAffx.14890.1.S1_at--792--7771Chr05:17661453..17661477 (25 bp)
GGTGCACCGACGAGATCAGGACCAA
LOC_Os05g30630
OsAffx.14890.1.S1_at--2--6411Chr05:17661440..17661464 (25 bp)
GATCAGGACCAAGAACAGCAGCTAC
LOC_Os05g30630
OsAffx.14890.1.S1_at--667--5491Chr05:17661428..17661452 (25 bp)
GAACAGCAGCTACAAAGGGATCATG
LOC_Os05g30630
OsAffx.14890.1.S1_at--1159--7651Chr05:17661412..17661436 (25 bp)
GGGATCATGCTGTGGCAGAGACCTA
LOC_Os05g30630
OsAffx.14890.1.S1_at--734--9111Chr05:17661405..17661429 (25 bp)
TGCTGTGGCAGAGACCTATGACATT
LOC_Os05g30630
Target Sequence 
AAGGAGCGTTGCAGGGTCAACGACATGTCCATTGTCAACTGGTACAAGCCCGGCAGCAAGAGCCCCCTCAGGGGCGGCTG
CTGGAGCCTACCTCGCCGGAAGGTGGTGTCCTCCGATCACCGCCTCCACGCAAGATCACACAAGGTGAGCAAGAAGGTGC
ACCGACGAGATCAGGACCAAGAACAGCAGCTACAAAGGGATCATGCTGTGGCAGAGACCTATGACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14890.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis