Browse Element(s) Details


OsAffx.14920.1.S1_at

Description tigr:9633.m02976
TID=OsAffx.14920.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3249011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32460OsAffx.23856.2.S1_at11/115+18875744..18877004VQ motif family protein
LOC_Os05g32470Os.54691.1.S1_x_at3/115+18880590..18884566hypothetical protein
LOC_Os05g32470OsAffx.10222.1.S1_x_at2/115+18880590..18884566hypothetical protein
LOC_Os05g32480OsAffx.7680.1.S1_at6/115+18887197..18893017transposon protein, putative, Mutator sub-class
LOC_Os05g32490OsAffx.14920.1.S1_at11/115+18893843..18895043hypothetical protein
LOC_Os05g32500Os.5987.1.S1_at11/115+18910449..18914617expressed protein
LOC_Os05g32510NANA5+18916164..18917713retrotransposon protein, putative, unclassified
LOC_Os05g32520NANA5+18918331..18921033hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14920.1.S1_at--762--6171Chr05:18894886..18894910 (25 bp)
GAGGAAATCCTAACCCTAGAGCCAT
LOC_Os05g32490
OsAffx.14920.1.S1_at--541--2611Chr05:18894875..18894899 (25 bp)
AACCCTAGAGCCATGCAGCGAAGAT
LOC_Os05g32490
OsAffx.14920.1.S1_at--327--1471Chr05:18894834..18894858 (25 bp)
AGAAGGTAGCTCCTCATTACCTGGT
LOC_Os05g32490
OsAffx.14920.1.S1_at--1074--7591Chr05:18894802..18894826 (25 bp)
GGGCAACTCGGTATCCTATAGGTCC
LOC_Os05g32490
OsAffx.14920.1.S1_at--886--10131Chr05:18894791..18894815 (25 bp)
TATCCTATAGGTCCCAGTGGCCTCA
LOC_Os05g32490
OsAffx.14920.1.S1_at--172--10631Chr05:18894760..18894784 (25 bp)
TTCGTTGCCCTCGTTGTGGAAGTGC
LOC_Os05g32490
OsAffx.14920.1.S1_at--943--4892Chr12:13573298..13573321 (24 bp)
GCTTAATTATCCTGATGAGGCCGTT
NONE
OsAffx.14920.1.S1_at--1077--6211Chr05:18894059..18894482 (25 bp)
GAGGCCGTTCAGACATGAGACAGCA
LOC_Os05g32490
OsAffx.14920.1.S1_at--533--1011Chr05:18894024..18894048 (25 bp)
AGGTTCAGGTTCAGATAGCACAAAA
LOC_Os05g32490
OsAffx.14920.1.S1_at--681--6131Chr05:18893903..18893927 (25 bp)
GAGGTCCAAATTCAGCCATATCACA
LOC_Os05g32490
OsAffx.14920.1.S1_at--252--2191Chr05:18893873..18893897 (25 bp)
ACACAGGTTCAGGTCCAAATTCAGA
LOC_Os05g32490
Target Sequence 
GAGGAAATCCTAACCCTAGAGCCATGCAGCGAAGATTTGGAGTGGCAAGTGAAGAAGGTAGCTCCTCATTACCTGGTCTT
ATTGGGGCAACTCGGTATCCTATAGGTCCCAGTGGCCTCACCCTTGTTCGTTGCCCTCGTTGTGGAAGTGCAGTAGTGGA
GTGCAGATCTTGGAGGCAGGGGGACGCGTTTTCTTCAAATGCGAGGATAACGAACAATTTGTGCCAAATTGTTGTACATT
CTTCAAGTGGATTAAGAGCTATAAGAAGATGGTGGAAGCAATGGAGCTTAATTATCCTGATGAGGCCGTTCAGACATGAG
ACAGCACAAAAATGGAAGGTTCAGGTTCAGATAGCACAAAATGACAGTTTCATGTTTGGCAACAAGCAACAAGCAACAAA
TTCATACACATATCAGATTTGGCAGCAAAGAACAAGCAACCCATTCAGATTCAGACAGAGGTCCAAATTCAGCCATATCA
CAAAAGGACACAGGTTCAGGTCCAAATTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14920.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis