Browse Element(s) Details


Os.5987.1.S1_at

Description gb:AK059645.1
DB_XREF= gi:32969663
TID=Os.5987.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5987 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-031-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-031-C01, full insert sequence.
FL= gb:AK059645.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3250011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32480OsAffx.7680.1.S1_at6/115+18887197..18893017transposon protein, putative, Mutator sub-class
LOC_Os05g32490OsAffx.14920.1.S1_at11/115+18893843..18895043hypothetical protein
LOC_Os05g32500Os.5987.1.S1_at11/115+18910449..18914617expressed protein
LOC_Os05g32510NANA5+18916164..18917713retrotransposon protein, putative, unclassified
LOC_Os05g32520NANA5+18918331..18921033hypothetical protein
LOC_Os05g32530Os.18718.1.S1_at3/115+18927734..18936628endo-beta-mannosidase, putative, expressed
LOC_Os05g32544OsAffx.14921.1.S1_x_at11/115+18938548..18947702glycosyltransferase, putative, expressed
LOC_Os05g32544OsAffx.14921.1.S1_at11/115+18938548..18947702glycosyltransferase, putative, expressed
LOC_Os05g32544Os.17807.1.S1_at10/115+18938548..18947702glycosyltransferase, putative, expressed
LOC_Os05g32544OsAffx.17881.1.S1_at1/115+18938548..18947702glycosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5987.1.S1_at--710--7531Chr05:18911149..18911173 (25 bp)
GTGGCAGTGAGCTTTTTTACATACC
LOC_Os05g32500
Os.5987.1.S1_at--914--3611Chr05:18911087..18911111 (25 bp)
CTTGTCGGCGATTTGGAATTGCACC
LOC_Os05g32500
Os.5987.1.S1_at--1016--2191Chr05:18911062..18911086 (25 bp)
ACAAAGTTGCTGTCCCGATGTTCTT
LOC_Os05g32500
Os.5987.1.S1_at--876--10751Chr05:18911011..18911035 (25 bp)
TTGACTCTGATGCTCTGGCTGGAAC
LOC_Os05g32500
Os.5987.1.S1_at--909--3611Chr05:18910971..18910995 (25 bp)
CTTGGTGGGCAACGAGACTTTCTCA
LOC_Os05g32500
Os.5987.1.S1_at--521--1191Chr05:18910946..18910970 (25 bp)
AGTATTTATACAGCTCACGCACCTG
LOC_Os05g32500
Os.5987.1.S1_at--241--5091Chr05:18910928..18910952 (25 bp)
GCACCTGCTGTTTTCCCAGTGAAAG
LOC_Os05g32500
Os.5987.1.S1_at--287--4891Chr05:18910878..18910902 (25 bp)
GCTTATTCGGGTTATGTCCACGGGA
LOC_Os05g32500
Os.5987.1.S1_at--1001--1911Chr05:18910859..18910883 (25 bp)
ACGGGAGACCCTCTTCTAATGGAGT
LOC_Os05g32500
Os.5987.1.S1_at--151--5451Chr05:18910808..18910832 (25 bp)
GAACGAAACTTCATCCTTGTGACAG
LOC_Os05g32500
Os.5987.1.S1_at--661--7791Chr05:18910632..18910656 (25 bp)
GGTCCAGCTGCCCTAGTGAAGGAAA
LOC_Os05g32500
Target Sequence 
GTGGCAGTGAGCTTTTTTACATACCACGTCAATTTGTTGAGGATTTTGGTGACCTTGTGGGACTTGTCGGCGATTTGGAA
TTGCACCACAAAGTTGCTGTCCCGATGTTCTTCCTGGCGATGGACTCGCCTAAAAATTTTGACTCTGATGCTCTGGCTGG
AACNAGTGTTCAGGAGCAACTTGGTGGGCAACGAGACTTTCTCAAGTATTTATACAGCTCACGCACCTGCTGTTTTCCCA
GTGAAAGTACAGAACGAGATTGATTTTATAAAGCTTATTCGGGTTATGTCCACGGGAGACCCTCTTCTAATGGAGTTGGT
ATAAATACATATTCTGTAGTTGGAACGAAACTTCATCCTTGTGACAGTGTGGACAGAGTAGACAGCCNTAGATTTCTGTT
TTCAGGGGGTTCTCCATTGTTGTAATTTCATTTATTCTGTTTATTTTGTAGCTGTTTTTTTTCCTCTGCTGTTGTATACT
GTTGTATCAATAGTGACATTGTTACTGAGGATCATCTTGGTCCAGCTGCCCTAGTGAAGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5987.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis