Browse Element(s) Details


Os.17807.1.S1_at

Description gb:AK110377.1
DB_XREF= gi:32995586
TID=Os.17807.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17807 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-165-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-165-C08, full insert sequence.
FL= gb:AK110377.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3254410/11glycosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32500Os.5987.1.S1_at11/115+18910449..18914617expressed protein
LOC_Os05g32510NANA5+18916164..18917713retrotransposon protein, putative, unclassified
LOC_Os05g32520NANA5+18918331..18921033hypothetical protein
LOC_Os05g32530Os.18718.1.S1_at3/115+18927734..18936628endo-beta-mannosidase, putative, expressed
LOC_Os05g32544OsAffx.14921.1.S1_x_at11/115+18938548..18947702glycosyltransferase, putative, expressed
LOC_Os05g32544OsAffx.14921.1.S1_at11/115+18938548..18947702glycosyltransferase, putative, expressed
LOC_Os05g32544Os.17807.1.S1_at10/115+18938548..18947702glycosyltransferase, putative, expressed
LOC_Os05g32544OsAffx.17881.1.S1_at1/115+18938548..18947702glycosyltransferase, putative, expressed
LOC_Os05g32560Os.24864.1.S1_at1/115+18957264..18962941transposon protein, putative, unclassified
LOC_Os05g32560Os.9332.2.S1_x_at1/115+18957264..18962941transposon protein, putative, unclassified
LOC_Os05g32570Os.11048.1.A1_at11/115+18972424..18976455expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17807.1.S1_at--981--1851NONE
ACGACCGCGGCGAGTGCAACTAGTT
NONE
Os.17807.1.S1_at--774--2271Chr05:18939070..18939094 (25 bp)
AAATGATCACTCCAAAGCCTGAAGG
LOC_Os05g32544
Os.17807.1.S1_at--682--1171Chr05:18939042..18939066 (25 bp)
AGTACTCCAGTACAGTGCAGCGCAC
LOC_Os05g32544
Os.17807.1.S1_at--267--1131Chr05:18939029..18939053 (25 bp)
AGTGCAGCGCACACATTGTGATGCA
LOC_Os05g32544
Os.17807.1.S1_at--462--891Chr05:18938960..18938984 (25 bp)
AGGCCCACTTGGAGACAGGACGTTT
LOC_Os05g32544
Os.17807.1.S1_at--988--7391Chr05:18938920..18938944 (25 bp)
GTGTTTTACCGTCGCGGATACCGAG
LOC_Os05g32544
Os.17807.1.S1_at--933--4691Chr05:18938873..18938897 (25 bp)
GCGGCTTGTCTTTGGCTCGGACAGC
LOC_Os05g32544
Os.17807.1.S1_at--943--7311Chr05:18938837..18938861 (25 bp)
GTGCTCCGTGCAGCTGACAGGTGTA
LOC_Os05g32544
Os.17807.1.S1_at--987--6211Chr05:18938762..18938786 (25 bp)
GATGGCGCGGTTTACCACGGAATCT
LOC_Os05g32544
Os.17807.1.S1_at--1068--9831Chr05:18938732..18938756 (25 bp)
TAAATCACTGTCTTTTCCGCTGCGT
LOC_Os05g32544
Os.17807.1.S1_at--549--2271Chr05:18938704..18938728 (25 bp)
AAATCCGCAGTGTCGGTCGTGTAGC
LOC_Os05g32544
Target Sequence 
ACGACCGCGGCGAGTGCAACTAGTTGGAGTTAAAAATGATCACTCCAAAGCCTGAAGGAGAAGTACTCCAGTACAGTGCA
GCGCACACATTGTGATGCAGAAAGTGTCAAAAGTGACCAGGGAAAAGTAAAGGCGCGAGAGGGAGGCCCACTTGGAGACA
GGACGTTTATTTTGTCCATTTCCGTGTTTTACCGTCGCGGATACCGAGGCGCGAGCAGCACGTGGCGGCCGCGGCTTGTC
TTTGGCTCGGACAGCGTGGCTGCTGCGTGCTCCGTGCAGCTGACAGGTGTAGGAGTAGTAGAGGAGAGGGTGTGCGAGTT
GAGTGGGGACGTGAACGGCAAGATGGCGCGGTTTACCACGGAATCTGACGATAAATCACTGTCTTTTCCGCTGCGTCCGA
AATCCGCAGTGTCGGTCGTGTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17807.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis