Browse Element(s) Details


OsAffx.14921.1.S1_at

Description tigr:9633.m02982
TID=OsAffx.14921.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3254411/11glycosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32500Os.5987.1.S1_at11/115+18910449..18914617expressed protein
LOC_Os05g32510NANA5+18916164..18917713retrotransposon protein, putative, unclassified
LOC_Os05g32520NANA5+18918331..18921033hypothetical protein
LOC_Os05g32530Os.18718.1.S1_at3/115+18927734..18936628endo-beta-mannosidase, putative, expressed
LOC_Os05g32544OsAffx.14921.1.S1_x_at11/115+18938548..18947702glycosyltransferase, putative, expressed
LOC_Os05g32544OsAffx.14921.1.S1_at11/115+18938548..18947702glycosyltransferase, putative, expressed
LOC_Os05g32544Os.17807.1.S1_at10/115+18938548..18947702glycosyltransferase, putative, expressed
LOC_Os05g32544OsAffx.17881.1.S1_at1/115+18938548..18947702glycosyltransferase, putative, expressed
LOC_Os05g32560Os.24864.1.S1_at1/115+18957264..18962941transposon protein, putative, unclassified
LOC_Os05g32560Os.9332.2.S1_x_at1/115+18957264..18962941transposon protein, putative, unclassified
LOC_Os05g32570Os.11048.1.A1_at11/115+18972424..18976455expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14921.1.S1_at--559--3971Chr05:18945325..18945349 (25 bp)
CGGGCGAGATAATGGCGCAGATTAT
LOC_Os05g32544
OsAffx.14921.1.S1_at--420--5031Chr05:18945309..18945333 (25 bp)
GCAGATTATAATACGCCGCGGTGGA
LOC_Os05g32544
OsAffx.14921.1.S1_at--893--8111Chr05:18945279..18945303 (25 bp)
GGACGGATGGGTGAGCGAGTGGATT
LOC_Os05g32544
OsAffx.14921.1.S1_at--412--8191Chr05:18945254..18945278 (25 bp)
GGCAAGAAAAGATGGCTTTTGCAAA
LOC_Os05g32544
OsAffx.14921.1.S1_at--808--2351Chr05:18945216..18945240 (25 bp)
AAAGCGGGTTTGTTCCTCACAAATG
LOC_Os05g32544
OsAffx.14921.1.S1_at--208--1631Chr05:18945214..18945238 (25 bp)
AGCGGGTTTGTTCCTCACAAATGCG
LOC_Os05g32544
OsAffx.14921.1.S1_at--182--3991Chr05:18945212..18945236 (25 bp)
CGGGTTTGTTCCTCACAAATGCGGG
LOC_Os05g32544
OsAffx.14921.1.S1_at--114--7711Chr05:18945188..18945212 (25 bp)
GGGTGCGAGACGGACGCCGGTGGTC
LOC_Os05g32544
OsAffx.14921.1.S1_at--988--3971Chr05:18945171..18945195 (25 bp)
CGGTGGTCGCATCGGCCAGCCAATC
LOC_Os05g32544
OsAffx.14921.1.S1_at--952--1791Chr05:18945134..18945158 (25 bp)
ACCGCTGCTCAACGTGCTCGTGTCC
LOC_Os05g32544
OsAffx.14921.1.S1_at--895--6751Chr05:18945115..18945139 (25 bp)
GTGTCCCCCGCCGTTTTTGTGCTTG
LOC_Os05g32544
Target Sequence 
CGGGCGAGATAATGGCGCAGATTATAATACGCCGCGGTGGATGGATGGACGGATGGGTGAGCGAGTGGATTGGCAAGAAA
AGATGGCTTTTGCAAAAGCGCTGCGGGGAAAAGCGGGTTTGTTCCTCACAAATGCGGGGGTGCGAGACGGACGCCGGTGG
TCGCATCGGCCAGCCAATCGGCGCCTCCACCACCGCTGCTCAACGTGCTCGTGTCCCCCGCCGTTTTTGTGCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14921.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis