Browse Element(s) Details


Os.18718.1.S1_at

Description gb:AK119412.1
DB_XREF= gi:37989035
TID=Os.18718.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18718 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-132-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-132-F10, full insert sequence.
FL= gb:AK119412.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g325303/11endo-beta-mannosidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32500Os.5987.1.S1_at11/115+18910449..18914617expressed protein
LOC_Os05g32510NANA5+18916164..18917713retrotransposon protein, putative, unclassified
LOC_Os05g32520NANA5+18918331..18921033hypothetical protein
LOC_Os05g32530Os.18718.1.S1_at3/115+18927734..18936628endo-beta-mannosidase, putative, expressed
LOC_Os05g32544OsAffx.14921.1.S1_x_at11/115+18938548..18947702glycosyltransferase, putative, expressed
LOC_Os05g32544OsAffx.14921.1.S1_at11/115+18938548..18947702glycosyltransferase, putative, expressed
LOC_Os05g32544Os.17807.1.S1_at10/115+18938548..18947702glycosyltransferase, putative, expressed
LOC_Os05g32544OsAffx.17881.1.S1_at1/115+18938548..18947702glycosyltransferase, putative, expressed
LOC_Os05g32560Os.24864.1.S1_at1/115+18957264..18962941transposon protein, putative, unclassified
LOC_Os05g32560Os.9332.2.S1_x_at1/115+18957264..18962941transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18718.1.S1_at--822--1311Chr05:18936274..18936298 (25 bp)
AGAGGTCTTTTGTACGGCTCTTTGT
LOC_Os05g32530
Os.18718.1.S1_at--1058--9531Chr05:18936279..18936303 (25 bp)
TCTTTTGTACGGCTCTTTGTAAAGA
LOC_Os05g32530
Os.18718.1.S1_at--752--231NONE
ATATAACTAGCTTCGTGGCTTTTTT
NONE
Os.18718.1.S1_at--493--6951NONE
GTAGATGTTCACAACATACACACAC
NONE
Os.18718.1.S1_at--161--2091Chr05:18936501..18936525 (25 bp)
ACATACACACACTCATTTTTATGAA
LOC_Os05g32530
Os.18718.1.S1_at--1067--5231NONE
GAATACACATGTACATTGTATCCTT
NONE
Os.18718.1.S1_at--449--51NONE
ATTGTATCCTTATGGTCACCTCTGA
NONE
Os.18718.1.S1_at--275--6911Chr05:18936540..18936748 (25 bp)
GTATCCTTATGGTCACCTCTGAATG
NONE
Os.18718.1.S1_at--350--7831NONE
GGTCACCTCTGAATGACTCACTGAG
NONE
Os.18718.1.S1_at--669--9691NONE
TCACTGAGTCAGTATATCTTGATAT
NONE
Os.18718.1.S1_at--254--6791NONE
GTTATCATAGATATCTCGTGGTTGA
NONE
Target Sequence 
AGAGGTCTTTTGTACGGCTCTTTGTAAAGAAAATGGAATCTGTGTGCTCCTATTAAATATGGCTNTATGAGTNTAAGCAC
ATTGAAGATCAGCTCCTGTATTTTTATATAACTAGCTTCGTGGCTTTTTTTAGAAAAAAAAAAGGTGGAGTTTGTAAGGA
AGGATTTTTTACTATTATTTTTTTAGAAACATAGTAAATAGTAAAACGTAGATGTTCACAACATACACACACTCATTTTT
ATGAATACACATGTACATTGTATCCTTATGGTCACCTCTGAATGACTCACTGAGTCAGTATATCTTGATATTAATAAAGT
TATCATAGATATCTCGTGGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18718.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis