Browse Element(s) Details


OsAffx.1494.1.S1_at

Description gb:NM_186308.1
DB_XREF= gi:34899701
GEN=OSJNBa0077B15.17
TID=OsAffx.1494.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0077B15.17 (OSJNBa0077B15.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0524011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05210OsAffx.12617.1.S1_at1/117+2337084..2337482hypothetical protein
LOC_Os07g05220OsAffx.18764.1.S1_at1/117+2356255..2356944hypothetical protein
LOC_Os07g05230OsAffx.16205.1.S1_at2/117+2357282..2359056hypothetical protein
LOC_Os07g05230OsAffx.5022.1.S1_at1/117+2357282..2359056hypothetical protein
LOC_Os07g05240OsAffx.1494.1.S1_at11/117+2359825..2362695retrotransposon protein, putative, unclassified, expressed
LOC_Os07g05240Os.12213.1.S1_at2/117+2359825..2362695retrotransposon protein, putative, unclassified, expressed
LOC_Os07g05240Os.5966.1.S1_at1/117+2359825..2362695retrotransposon protein, putative, unclassified, expressed
LOC_Os07g05250OsAffx.16095.1.S1_at11/117+2365927..2366456hypothetical protein
LOC_Os07g05260Os.44486.1.S1_at11/117+2367490..2368947expressed protein
LOC_Os07g05270OsAffx.16096.1.S1_s_at11/117+2375734..2376125hypothetical protein
LOC_Os07g05270OsAffx.16096.1.S1_at7/117+2375734..2376125hypothetical protein
LOC_Os07g05280NANA7+2380861..2384823retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1494.1.S1_at--592--9191Chr07:2362097..2362121 (25 bp)
TGCCAACCACTCTGGTTCACGAAAA
LOC_Os07g05240
OsAffx.1494.1.S1_at--215--6751Chr07:2362111..2362135 (25 bp)
GTTCACGAAAACAGCGACTCCATCT
LOC_Os07g05240
OsAffx.1494.1.S1_at--636--9011Chr07:2362138..2362162 (25 bp)
TGCACTTTCCACTCGAGAACAGACC
LOC_Os07g05240
OsAffx.1494.1.S1_at--879--2351Chr07:2362163..2362187 (25 bp)
AAACCAAGTTCTGGGTCACTAATGT
LOC_Os07g05240
OsAffx.1494.1.S1_at--1007--8411Chr07:2362375..2362399 (25 bp)
GGCCTTGTAGACATTGACATTCCCA
LOC_Os07g05240
OsAffx.1494.1.S1_at--632--5671Chr07:2362390..2362414 (25 bp)
GACATTCCCAACAGAAGTTTCACTT
LOC_Os07g05240
OsAffx.1494.1.S1_at--353--5591Chr07:2362430..2362454 (25 bp)
GAAATCCCACACTGGTGAAGCTTGA
LOC_Os07g05240
OsAffx.1494.1.S1_at--1039--8511Chr07:2362477..2362501 (25 bp)
TGGAACCAATCGTTCGCAACCTCAT
LOC_Os07g05240
OsAffx.1494.1.S1_at--904--1651Chr07:2362509..2362533 (25 bp)
AGCCCTAGTGGCGACAACTTCGGAT
LOC_Os07g05240
OsAffx.1494.1.S1_at--275--431Chr07:2362532..2362556 (25 bp)
ATCATATCCCTATTCTGGCCGAGTG
LOC_Os07g05240
OsAffx.1494.1.S1_at--438--4831Chr07:2362556..2362580 (25 bp)
GCTCAAACAACTCAAACACATTCCG
LOC_Os07g05240
Target Sequence 
TGCCAACCACTCTGGTTCACGAAAACAGCGACTCCATCTCCTGCACTTTCCACTCGAGAACAGACCAAACCAAGTTCTGG
GTCACTAATGTATACGCCCCCCATTCGGAAGATGAAAAGCTAATCTTCTTTAATCAACTTTCAACGCTCAGAATTGCAAA
CAAAGAGCTATGGTGCTGCATTGGGAATTTTAATATCTACAGATACCCTTTTGAGGAAAACAACGACAACTTAAACACAA
GAGGAATGGTGGGTTTCAACTGTTGGATAAATGAAGAAGGCCTTGTAGACATTGACATTCCCAACAGAAGTTTCACTTGG
TCTAACAAAAGAAGAAATCCCACACTGGTGAAGCTTGACAGGATTCTTGTCGACACAAGCTGGAACCAATCGTTCGCAAC
CTCATCTGCCAGAGCCCTAGTGGCGACAACTTCGGATCATATCCCTATTCTGGCCGAGTGCTCAAACAACTCAAACACAT
TCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1494.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis