Browse Element(s) Details


OsAffx.14985.1.S1_at

Description tigr:9633.m03401
TID=OsAffx.14985.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Dof domain, zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3690011/11Dof domain, zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g36390OsAffx.22848.3.S1_x_at2/115+21452268..21454435retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g36400NANA5+21456602..21461339retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g36900OsAffx.14985.1.S1_at11/115+21472368..21473351Dof domain, zinc finger family protein
LOC_Os05g36910Os.4894.2.S1_a_at11/115+21474180..21476854NC domain-containing protein, putative, expressed
LOC_Os05g36920Os.4894.1.S1_a_at11/115+21478189..21481136Histone deacetylase family protein, expressed
LOC_Os05g36930Os.27331.1.S1_at11/115+21484176..21488626Histone deacetylase family protein, expressed
LOC_Os05g36940NANA5+21490995..21495302retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g36950OsAffx.14986.1.S1_at11/115+21496386..21496662hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14985.1.S1_at--1071--4671Chr05:21472845..21472869 (25 bp)
GCGGACGGCTCCACGATTGACCTGG
LOC_Os05g36900
OsAffx.14985.1.S1_at--143--8931Chr05:21472862..21472886 (25 bp)
TGACCTGGCCTTGCTGTACGCCAAG
LOC_Os05g36900
OsAffx.14985.1.S1_at--893--5251Chr05:21472944..21472968 (25 bp)
GAATCGGTCGACACCTCGAGCGGGT
LOC_Os05g36900
OsAffx.14985.1.S1_at--840--1631Chr05:21472962..21472986 (25 bp)
AGCGGGTCATCGAGCGATCGCACGA
LOC_Os05g36900
OsAffx.14985.1.S1_at--143--7651Chr05:21473116..21473140 (25 bp)
GGGAGCTCAACTTCAGCGTGGACCA
LOC_Os05g36900
OsAffx.14985.1.S1_at--617--1631Chr05:21473130..21473154 (25 bp)
AGCGTGGACCAGATCAGCTGCTACA
LOC_Os05g36900
OsAffx.14985.1.S1_at--967--4091Chr05:21473173..21473197 (25 bp)
CGACGGACGGCGGAGATCTGATCCT
LOC_Os05g36900
OsAffx.14985.1.S1_at--574--8051Chr05:21473184..21473208 (25 bp)
GGAGATCTGATCCTGCCGTCGACGC
LOC_Os05g36900
OsAffx.14985.1.S1_at--753--8091Chr05:21473210..21473234 (25 bp)
GGACCAGCATGCCAAGTACGAGCCG
LOC_Os05g36900
OsAffx.14985.1.S1_at--908--2831Chr05:21473223..21473247 (25 bp)
AAGTACGAGCCGTTCGATTCGCTCC
LOC_Os05g36900
OsAffx.14985.1.S1_at--774--1851Chr05:21473287..21473311 (25 bp)
ACGACGATGTCTGGTGCAACGCGTT
LOC_Os05g36900
Target Sequence 
GCGGACGGCTCCACGATTGACCTGGCCTTGCTGTACGCCAAGTTCTTGAACCACCACCAGCCTACTATGGCGGAGCAGGG
CGGTGGCGCCGCCGTGCCGGAATCGGTCGACACCTCGAGCGGGTCATCGAGCGATCGCACGACGAGCCCGGCCGCCGCGC
AGCCTGCGGCGGCGGCGGCGTACGGCCCGGGGCAAGACGGGCTCGTCGGCGAGCCGATCAGCACGGAGGAGCACGGTGCA
GCAGCCATGGCGCGGTGCGCGCAGGCGCTCGGGGAGCTCAACTTCAGCGTGGACCAGATCAGCTGCTACACCTCGCTGGG
GTTGCCAACGACGGACGGCGGAGATCTGATCCTGCCGTCGACGCTGGACCAGCATGCCAAGTACGAGCCGTTCGATTCGC
TCCCCGAGGACGCGCTCAGCCTCCACGACATCATCTCCGGCGACGACGATGTCTGGTGCAACGCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14985.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis