Browse Element(s) Details


OsAffx.14998.1.S1_at

Description tigr:9633.m03485
TID=OsAffx.14998.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3771010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37690Os.17042.1.S1_at11/115+21977725..21980654Coronatine-insensitive protein 1, putative, expressed
LOC_Os05g37690OsAffx.16860.1.S1_at1/115+21977725..21980654Coronatine-insensitive protein 1, putative, expressed
LOC_Os05g37700Os.18881.1.S1_at11/115+21985304..21989715Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os05g37700Os.7745.1.S1_at11/115+21985304..21989715Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os05g37700Os.23325.1.A1_at1/115+21985304..21989715Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os05g37710OsAffx.14998.1.S1_at10/115+21992483..21993153hypothetical protein
LOC_Os05g37720OsAffx.4549.1.S1_at10/115+21993561..21996895hypothetical protein
LOC_Os05g37730Os.18392.1.S1_at11/115+21998191..22000281MYB-like transcription factor DIVARICATA, putative, expressed
LOC_Os05g37740OsAffx.22711.4.A1_x_at5/115+22014949..22015620transposon protein, putative, unclassified
LOC_Os05g37750OsAffx.21171.4.S1_x_at6/115+22016699..22018354retrotransposon protein, putative, unclassified
LOC_Os05g37750OsAffx.21171.2.S1_at2/115+22016699..22018354retrotransposon protein, putative, unclassified
LOC_Os05g37750OsAffx.21171.3.S1_x_at2/115+22016699..22018354retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14998.1.S1_at--18--571Chr05:21992513..21992537 (25 bp)
ATCCTGTTCACTTGCCTCTGCAGCT
LOC_Os05g37710
OsAffx.14998.1.S1_at--182--2071Chr05:21992522..21992546 (25 bp)
ACTTGCCTCTGCAGCTTTGCACTGA
LOC_Os05g37710
OsAffx.14998.1.S1_at--46--9491Chr05:21992529..21992553 (25 bp)
TCTGCAGCTTTGCACTGATCCACAT
LOC_Os05g37710
OsAffx.14998.1.S1_at--487--3331Chr05:21992541..21992565 (25 bp)
CACTGATCCACATCGATGATAATAC
LOC_Os05g37710
OsAffx.14998.1.S1_at--645--2092Chr05:21992550..21992574 (25 bp)
ACATCGATGATAATACTACTCCTAT
LOC_Os05g37710
OsAffx.14998.1.S1_at--435--331Chr05:21992562..21992586 (25 bp)
ATACTACTCCTATTTGGTCATTTGG
LOC_Os05g37710
OsAffx.14998.1.S1_at--94--3811Chr05:21992568..21992592 (25 bp)
CTCCTATTTGGTCATTTGGTGTGCA
LOC_Os05g37710
OsAffx.14998.1.S1_at--24--9611Chr05:21992579..21992603 (25 bp)
TCATTTGGTGTGCAAGTGCAGCAAC
LOC_Os05g37710
OsAffx.14998.1.S1_at--1031--7331Chr05:21992594..21992618 (25 bp)
GTGCAGCAACAACTTGGCGTTTCAC
LOC_Os05g37710
OsAffx.14998.1.S1_at--520--3411Chr05:21992597..21992621 (25 bp)
CAGCAACAACTTGGCGTTTCACAAA
LOC_Os05g37710
OsAffx.14998.1.S1_at--622--8351NONE
TGGCGTTTCACAAAAAGGTTTTGAT
NONE
Target Sequence 
ATCCTGTTCACTTGCCTCTGCAGCTTTGCACTGATCCACATCGATGATAATACTACTCCTATTTGGTCATTTGGTGTGCA
AGTGCAGCAACAACTTGGCGTTTCACAAAAAGGTTTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14998.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis