Browse Element(s) Details


OsAffx.15059.1.S1_at

Description tigr:9633.m03885
TID=OsAffx.15059.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4147011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41430OsAffx.27284.1.S1_at2/115+24177048..24179113hypothetical protein
LOC_Os05g41440Os.5391.1.S1_at11/115+24187878..24191966Cytochrome P450 98A1, putative, expressed
LOC_Os05g41450Os.51018.1.S1_at11/115+24192758..24197089Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os05g41460Os.7892.1.S1_a_at10/115+24197246..24198517Cysteine proteinase inhibitor-II, putative, expressed
LOC_Os05g41470OsAffx.15059.1.S1_at11/115+24199172..24199603hypothetical protein
LOC_Os05g41480Os.11883.1.S1_at11/115+24204369..24206411phosphate translocator, putative, expressed
LOC_Os05g41480Os.11883.2.S1_at11/115+24204369..24206411phosphate translocator, putative, expressed
LOC_Os05g41490Os.55479.1.S1_at11/115+24208524..24209648circadian clock coupling factor ZGT, putative, expressed
LOC_Os05g41500NANA5+24215073..24215576hypothetical protein
LOC_Os05g41510Os.52922.1.S1_at11/115+24218139..24226631glycine-rich protein, putative, expressed
LOC_Os05g41510Os.9185.1.S1_at11/115+24218139..24226631glycine-rich protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15059.1.S1_at--434--7531Chr05:24199232..24199256 (25 bp)
GTGGCAGTGCATGGCGACAGTTCAA
LOC_Os05g41470
OsAffx.15059.1.S1_at--855--6731Chr05:24199251..24199275 (25 bp)
GTTCAAACGACATCAACGGTCGCCC
LOC_Os05g41470
OsAffx.15059.1.S1_at--77--3691Chr05:24199275..24199299 (25 bp)
CTATCCCCTCCTTCACAAATGTGGG
LOC_Os05g41470
OsAffx.15059.1.S1_at--167--8391Chr05:24199309..24199333 (25 bp)
GGCGAGCTGCAGTTCCATCGACCCG
LOC_Os05g41470
OsAffx.15059.1.S1_at--650--9351Chr05:24199343..24199367 (25 bp)
TCGCTTCTAGATCTCGCCTTTATTA
LOC_Os05g41470
OsAffx.15059.1.S1_at--1141--1271Chr05:24199351..24199375 (25 bp)
AGATCTCGCCTTTATTAGTTGTGGA
LOC_Os05g41470
OsAffx.15059.1.S1_at--692--331Chr05:24199392..24199416 (25 bp)
ATACATGGGTCGGTGTGGTACGCCC
LOC_Os05g41470
OsAffx.15059.1.S1_at--1144--2051Chr05:24199455..24199479 (25 bp)
ACTTCCTCGCAACAGTGGCGGCCTT
LOC_Os05g41470
OsAffx.15059.1.S1_at--245--3191Chr05:24199494..24199518 (25 bp)
CAATGCCTCCATGCCGAGAGCTTGG
LOC_Os05g41470
OsAffx.15059.1.S1_at--671--891Chr05:24199524..24199548 (25 bp)
AGGCCCTGCAGGCTGGTTCACATGA
LOC_Os05g41470
OsAffx.15059.1.S1_at--304--5651Chr05:24199547..24199571 (25 bp)
GACAGCGGTGAAGATTCGTCCATCG
LOC_Os05g41470
Target Sequence 
GTGGCAGTGCATGGCGACAGTTCAAACGACATCAACGGTCGCCCTATCCCCTCCTTCACAAATGTGGGGTGGCCGCCGGC
GAGCTGCAGTTCCATCGACCCGTCATCGTCGTCGCTTCTAGATCTCGCCTTTATTAGTTGTGGAGGAGGGATCATGGAGT
ATACATGGGTCGGTGTGGTACGCCCCTCTCCTCTATGTGCTCGTACCCCCTGGCCGTCGAGCCACTTCCTCGCAACAGTG
GCGGCCTTGGCGACAGGCACCCCAATGCCTCCATGCCGAGAGCTTGGGGGTGAGGCCCTGCAGGCTGGTTCACATGACAG
CGGTGAAGATTCGTCCATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15059.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis