Browse Element(s) Details


OsAffx.15060.1.S1_at

Description tigr:9633.m03901
TID=OsAffx.15060.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4163011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41580Os.27028.1.A1_at2/115+24263999..24270810Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os05g41590Os.11570.1.S1_s_at11/115+24274702..24277906Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os05g41590Os.11570.1.S1_at11/115+24274702..24277906Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os05g41590Os.35559.1.S1_at6/115+24274702..24277906Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os05g41599NANA5+24279361..24279781NA
LOC_Os05g41610Os.4160.1.S1_at11/115+24288010..24291479Glucan endo-1,3-beta-glucosidase GVI precursor, putative, expressed
LOC_Os05g41620Os.14205.1.S1_at11/115+24291803..24293628expressed protein
LOC_Os05g41630OsAffx.15060.1.S1_at11/115+24293707..24294697expressed protein
LOC_Os05g41640Os.9261.1.A1_at11/115+24295444..24298321Phosphoglycerate kinase, chloroplast precursor, putative, expressed
LOC_Os05g41650NANA5+24299227..24299556hypothetical protein
LOC_Os05g41660OsAffx.4591.1.S1_at11/115+24299974..24301290ICE-like protease p20 domain containing protein, expressed
LOC_Os05g41670Os.5532.1.S1_at11/115+24301696..24304131latex-abundant protein, putative, expressed
LOC_Os05g41680OsAffx.31069.1.S1_x_at1/115+24305904..24307684retrotransposon protein, putative, unclassified
LOC_Os05g41690Os.28943.1.S1_x_at3/115+24308459..24311668retrotransposon protein, putative, unclassified
LOC_Os05g41700NANA5+24312289..24317919retrotransposon protein, putative, unclassified
LOC_Os05g41710NANA5+24319344..24319802hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15060.1.S1_at--479--4111Chr05:24294363..24294387 (25 bp)
CGAATGCCGCTGCTGAGATAGCTCA
LOC_Os05g41630
OsAffx.15060.1.S1_at--589--1451Chr05:24294339..24294363 (25 bp)
AGAAGCAGCCTGACGACGACGAACC
LOC_Os05g41630
OsAffx.15060.1.S1_at--456--5431Chr05:24294319..24294343 (25 bp)
GAACCCATCGAGAAGTTCGTCCCAA
LOC_Os05g41630
OsAffx.15060.1.S1_at--107--5891Chr05:24294265..24294289 (25 bp)
GAGCGCATCGCGAAAGATCTTCTTA
LOC_Os05g41630
OsAffx.15060.1.S1_at--794--2331Chr05:24294254..24294277 (24 bp)
AAAGATCTTCTTAGACCTTACGAGA
LOC_Os05g41630
OsAffx.15060.1.S1_at--812--2771Chr05:24293966..24293990 (25 bp)
AAGAGGCTTCACGTCAACAAGGCCG
LOC_Os05g41630
OsAffx.15060.1.S1_at--295--5771Chr05:24293903..24293927 (25 bp)
GACGATTGTCTATCATCTTAACTCA
LOC_Os05g41630
OsAffx.15060.1.S1_at--936--9691Chr05:24293869..24293893 (25 bp)
TCACAGTGAATGACAGACCTGCTCT
LOC_Os05g41630
OsAffx.15060.1.S1_at--889--8791Chr05:24293842..24293866 (25 bp)
TGTTCTGTTCTTGTGTCGAGATCCA
LOC_Os05g41630
OsAffx.15060.1.S1_at--946--7211Chr05:24293828..24293852 (25 bp)
GTCGAGATCCAGACTTAGTTGATTT
LOC_Os05g41630
OsAffx.15060.1.S1_at--758--1111Chr05:24293737..24293761 (25 bp)
AGTGTTCAGATGATCCTTTATGCCT
LOC_Os05g41630
Target Sequence 
CGAATGCCGCTGCTGAGATAGCTCAGAAGCAGCCTGACGACGACGAACCCATCGAGAAGTTCGTCCCAAAATCGGAGAAG
GAATTCGCCGAGTACGCCGAGCGCATCGCGAAAGATCTTCTTAGACCTTACGAGAAAAGCTACCATTACATTGGTCTTAT
GAAGGCGATGAACAAGCTCGCCGTGGCGTCGCTGACGTCGACGAGCGTGAAGGAGATCGTGTCGTCCATGACGACGGTGG
CCAACGAGAAGCTCAAGGCCGAGAAGGCGGCCGACGCCGGCAAGAAGAAGCCAGGGCAGAAGAAGAAGAGGCTTCACGTC
AACAAGGCCGAAGGGCAAAAGTTTCGTGATGCTGACGACGACGACGACGACGATTGTCTATCATCTTAACTCACAAAGAG
CCTCACAGTGAATGACAGACCTGCTCTGTTGTTCTGTTCTTGTGTCGAGATCCAGACTTAGTTGATTTCTGTTGGTTTTA
ATGTCAACTTAGTTGATTTCTATTGTTTTAATGTTTGATTTCTGATCATACATAAGTGTTCAGATGATCCTTTATGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15060.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis