Browse Element(s) Details


OsAffx.15084.1.S1_at

Description tigr:9633.m04036
TID=OsAffx.15084.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4340011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43350NANA5+25125622..25130445retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g43360Os.11069.1.S1_at11/115+25131326..25134653NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os05g43370Os.49125.1.S1_s_at6/115+25135532..25141061tRNA pseudouridine synthase D family protein, expressed
LOC_Os05g43370Os.6027.1.A1_at1/115+25135532..25141061tRNA pseudouridine synthase D family protein, expressed
LOC_Os05g43370OsAffx.15220.3.S1_at1/115+25135532..25141061tRNA pseudouridine synthase D family protein, expressed
LOC_Os05g43380Os.23126.1.S1_at11/115+25141682..25144197Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os05g43390Os.7516.1.S1_at11/115+25146490..25149994Signal recognition particle 54 kDa protein 2, putative, expressed
LOC_Os05g43400OsAffx.15084.1.S1_at11/115+25152634..25154489hypothetical protein
LOC_Os05g43410NANA5+25156077..25162231retrotransposon protein, putative, unclassified
LOC_Os05g43420NANA5+25162852..25166143retrotransposon protein, putative, unclassified
LOC_Os05g43440Os.22455.1.A1_at9/115+25171607..25176541Single-strand binding protein family protein, expressed
LOC_Os05g43450Os.53504.1.S1_at11/115+25177479..25180516Transcription initiation factor IIF, beta subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15084.1.S1_at--466--3631Chr05:25153811..25153835 (25 bp)
CTTCCTGGAACTTGGCCCATATGAA
LOC_Os05g43400
OsAffx.15084.1.S1_at--734--5191Chr05:25153979..25154003 (25 bp)
GCAATCCTGGGAGTACTGTTGTGAT
LOC_Os05g43400
OsAffx.15084.1.S1_at--1005--10811Chr05:25154010..25154034 (25 bp)
TTGGTCCTTTCAAACACTCCACAGA
LOC_Os05g43400
OsAffx.15084.1.S1_at--648--2791Chr05:25154059..25154083 (25 bp)
AAGAGGTTAGCTGGTGCTACCACTA
LOC_Os05g43400
OsAffx.15084.1.S1_at--631--1131Chr05:25154083..25154107 (25 bp)
AGTGCTGTCAGCCTAACAAACACCA
LOC_Os05g43400
OsAffx.15084.1.S1_at--314--1171Chr05:25154288..25154312 (25 bp)
AGTCAACCTCCAAGCAATTGTGCCA
LOC_Os05g43400
OsAffx.15084.1.S1_at--494--3171Chr05:25154303..25154327 (25 bp)
AATTGTGCCATACTCCAAGGGTTCT
LOC_Os05g43400
OsAffx.15084.1.S1_at--197--4971Chr05:25154328..25154352 (25 bp)
GCATCAGCTTCAATTCAGGTTACAT
LOC_Os05g43400
OsAffx.15084.1.S1_at--169--8651Chr05:25154354..25154378 (25 bp)
TGGGAAGGCTTGTGTGTCAGTCTCA
LOC_Os05g43400
OsAffx.15084.1.S1_at--525--7453Chr05:25154365..25154389 (25 bp)
GTGTGTCAGTCTCAGCTCAAGAACC
LOC_Os05g43400
OsAffx.15084.1.S1_at--208--871Chr05:25154431..25154455 (25 bp)
AGGCCAAGACACCTGGATCTATTCT
LOC_Os05g43400
Target Sequence 
CTTCCTGGAACTTGGCCCATATGAAAGCAACAGTTCAGGAGGAAATGTTTGCTGATGCTTCATTTTCCAAGTTGAAGAGA
GCCAAGAAACTTGTGATGCTGAAGGCTATGGATGCCAGAAAAGGGCAATATCAAAAATTGTACAACTATCAGCAAGAGTT
GCTTAGAAGCAATCCTGGGAGTACTGTTGTGATAACAACTTGGTCCTTTCAAACACTCCACAGAGTTTTGTGCAGAGCAA
AAAAAAGGAAGAGGTTAGCTGGTGCTACCACTAGTGCTGTCAGCCTAACAAACACCACAAGTGCTACTAAGCAGAAGGGG
CAACAATCCAATATTGTCAGCATGAATGCTAAGGCAAAGTTGGCAACACAGGCAGGTGGTTCGGCCACAGTCAACCTCCA
AGCAATTGTGCCATACTCCAAGGGTTCTGCATCAGCTTCAATTCAGGTTACATCTGGGAAGGCTTGTGTGTCAGTCTCAG
CTCAAGAACCAGCAAAGAAGACAAAAATTGGTGGTCCTCCTCCACCCAAGAAGGCCAAGACACCTGGATCTATTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15084.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis