Browse Element(s) Details


OsAffx.15164.1.S1_at

Description tigr:9633.m04630
TID=OsAffx.15164.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4940011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49340NANA5+28221357..28221863hypothetical protein
LOC_Os05g49350Os.47971.1.A1_at11/115+28223817..28224783expressed protein
LOC_Os05g49360NANA5+28226592..28227075hypothetical protein
LOC_Os05g49370Os.50975.1.S1_at11/115+28227633..28228661expressed protein
LOC_Os05g49380Os.17122.1.S1_at11/115+28231795..28235367Protease Do-like 1, chloroplast precursor, putative, expressed
LOC_Os05g49390OsAffx.27381.1.S1_at11/115+28236893..28242625hypothetical protein
LOC_Os05g49400OsAffx.15164.1.S1_at11/115+28244147..28245511F-box domain containing protein
LOC_Os05g49410Os.49345.1.S1_at10/115+28246150..28247425expressed protein
LOC_Os05g49420Os.19553.1.S1_at11/115+28251474..28256334G-box binding factor 1, putative, expressed
LOC_Os05g49430Os.33445.1.A1_at11/115+28259281..28261831Possible apospory-associated protein C, putative, expressed
LOC_Os05g49440Os.2250.1.S1_a_at11/115+28263471..28264618secreted protein, putative, expressed
LOC_Os05g49450OsAffx.15165.1.S1_at11/115+28265893..28267203F-box domain containing protein
LOC_Os05g49460OsAffx.15166.2.S1_at11/115+28268587..28273535CTP synthase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15164.1.S1_at--91--6171Chr05:28244959..28244983 (25 bp)
GAGGTTGTGCCTGGCCATCAGGACA
LOC_Os05g49400
OsAffx.15164.1.S1_at--810--3491Chr05:28245039..28245063 (25 bp)
CATGGCAGCTTCTCTACAAGTTCAA
LOC_Os05g49400
OsAffx.15164.1.S1_at--189--2631Chr05:28245086..28245110 (25 bp)
AACCAATTTCAAAGGCTAGTGCCCA
LOC_Os05g49400
OsAffx.15164.1.S1_at--340--10071Chr05:28245102..28245126 (25 bp)
TAGTGCCCATGAGTGCTTGGCTCGA
LOC_Os05g49400
OsAffx.15164.1.S1_at--215--1711Chr05:28245134..28245158 (25 bp)
ACCAACACGCTTTGCTACCGAGAGG
LOC_Os05g49400
OsAffx.15164.1.S1_at--422--9971Chr05:28245170..28245194 (25 bp)
TACCGTAAGTACGTCGGCACTACCA
LOC_Os05g49400
OsAffx.15164.1.S1_at--249--5131Chr05:28245197..28245221 (25 bp)
GCAACAGTACGACGTTTTTCTTCGA
LOC_Os05g49400
OsAffx.15164.1.S1_at--439--8091Chr05:28245244..28245268 (25 bp)
GGACAGCAAAATCTGCCTCCCGGTG
LOC_Os05g49400
OsAffx.15164.1.S1_at--380--9231Chr05:28245291..28245315 (25 bp)
TCCAGTGGGACATCTACGCGGGCTA
LOC_Os05g49400
OsAffx.15164.1.S1_at--490--2871Chr05:28245377..28245401 (25 bp)
AAGTGTGATCTGTTCATCCGCAGCT
LOC_Os05g49400
OsAffx.15164.1.S1_at--536--2411Chr05:28245423..28245447 (25 bp)
AAAAATCACAGAAATGCCGCCCGTC
LOC_Os05g49400
Target Sequence 
GAGGTTGTGCCTGGCCATCAGGACAGAGAGGATGATCCAGTTTTGGACAATGCCAGTTGAAGAAGACGACGACGACCAAC
CATGGCAGCTTCTCTACAAGTTCAAGGTCGTGGATGATATCCGATTCAACCAATTTCAAAGGCTAGTGCCCATGAGTGCT
TGGCTCGACGGCCACACCAACACGCTTTGCTACCGAGAGGGCAACAACGTGTACCGTAAGTACGTCGGCACTACCACGGC
AACAGTACGACGTTTTTCTTCGACAAAGGTCGTTATTATGTCGTGGGACAGCAAAATCTGCCTCCCGGTGGCTTCATCGT
CGTTGTCGTCGTTCCAGTGGGACATCTACGCGGGCTACCGTCCGACCCTGCTATCGCCTCTCACCTTTGCATCCGGGCAA
CATGAGGAAGATGATAACAAGTGTGATCTGTTCATCCGCAGCTTACTACGCACACTGCGATCCCAAAAATCACAGAAATG
CCGCCCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15164.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis