Browse Element(s) Details


OsAffx.15165.1.S1_at

Description tigr:9633.m04637
TID=OsAffx.15165.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4945011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49390OsAffx.27381.1.S1_at11/115+28236893..28242625hypothetical protein
LOC_Os05g49400OsAffx.15164.1.S1_at11/115+28244147..28245511F-box domain containing protein
LOC_Os05g49410Os.49345.1.S1_at10/115+28246150..28247425expressed protein
LOC_Os05g49420Os.19553.1.S1_at11/115+28251474..28256334G-box binding factor 1, putative, expressed
LOC_Os05g49430Os.33445.1.A1_at11/115+28259281..28261831Possible apospory-associated protein C, putative, expressed
LOC_Os05g49440Os.2250.1.S1_a_at11/115+28263471..28264618secreted protein, putative, expressed
LOC_Os05g49450OsAffx.15165.1.S1_at11/115+28265893..28267203F-box domain containing protein
LOC_Os05g49460OsAffx.15166.2.S1_at11/115+28268587..28273535CTP synthase family protein
LOC_Os05g49470Os.51690.1.S1_at11/115+28273744..28275805expressed protein
LOC_Os05g49480Os.52814.1.S1_at11/115+28277330..28278658transcription factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15165.1.S1_at--1136--10131Chr05:28266359..28266383 (25 bp)
TATGCCTGGCCATCAGGTCTGATAC
LOC_Os05g49450
OsAffx.15165.1.S1_at--961--2251Chr05:28266302..28266326 (25 bp)
AAATATCCATGCGTGCTTGGCTCGA
LOC_Os05g49450
OsAffx.15165.1.S1_at--929--4931Chr05:28266288..28266312 (25 bp)
GCTTGGCTCGATGGTGATACCCACA
LOC_Os05g49450
OsAffx.15165.1.S1_at--894--6471Chr05:28266273..28266297 (25 bp)
GATACCCACACGTTGTGCTACGGAG
LOC_Os05g49450
OsAffx.15165.1.S1_at--928--6631Chr05:28266238..28266262 (25 bp)
GTTGTACTCCAGGTATGTCGGCACA
LOC_Os05g49450
OsAffx.15165.1.S1_at--972--10311Chr05:28266176..28266200 (25 bp)
TTTCTCCGACCGAGGTTATGTCATG
LOC_Os05g49450
OsAffx.15165.1.S1_at--1157--9211Chr05:28266124..28266148 (25 bp)
TCCACCGTGGTTAGTGTCGTGCAAC
LOC_Os05g49450
OsAffx.15165.1.S1_at--725--8511Chr05:28266099..28266123 (25 bp)
TGGAACATCTACACGGGATACCGCC
LOC_Os05g49450
OsAffx.15165.1.S1_at--1111--4311Chr05:28265994..28266018 (25 bp)
CCATTCGTCCGCAGATTGTTGTGTG
LOC_Os05g49450
OsAffx.15165.1.S1_at--1149--8811Chr05:28265978..28266002 (25 bp)
TGTTGTGTGCACTACGACACCAGAA
LOC_Os05g49450
OsAffx.15165.1.S1_at--262--771Chr05:28265937..28265961 (25 bp)
ATGTCTCCAACATCAACCGATCATA
LOC_Os05g49450
Target Sequence 
TATGCCTGGCCATCAGGTCTGATACGGAAATCCATTTCTGGAAAATGCCTGTTGAAGAAATATCCATGCGTGCTTGGCTC
GATGGTGATACCCACACGTTGTGCTACGGAGTGGACAATAAGTTGTACTCCAGGTATGTCGGCACAACCATGACGATGAC
AACATCGCTGGCGGCACGGTGTCTTTCTCCGACCGAGGTTATGTCATGGGACTGCAAAATCCGTCTCCCTACGACTCCAC
CGTGGTTAGTGTCGTGCAACTGGAACATCTACACGGGATACCGCCCCAGCCTGCTCTCGCCTCTCACCTTTGCGTCCCAG
CAAGATAACAACGACGATGATGAAGATGAAGGCGACGAGTCCCGTCCATTCGTCCGCAGATTGTTGTGTGCACTACGACA
CCAGAAATCGCAGAAACGCCGCATGTCTCCAACATCAACCGATCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15165.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis