Browse Element(s) Details


OsAffx.15200.2.S1_x_at

Description tigr:9633.m03495
TID=OsAffx.15200.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3781011/11hypothetical protein
LOC_Os03g190305/11hypothetical protein
LOC_Os01g387503/11hypothetical protein
LOC_Os06g355701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37790OsAffx.14999.1.S1_at11/115+22047186..22047623hypothetical protein
LOC_Os05g37800Os.51914.1.A1_at11/115+22056861..22059120expressed protein
LOC_Os05g37810OsAffx.15200.2.S1_x_at11/115+22066811..22067634hypothetical protein
LOC_Os05g37810OsAffx.15200.2.S1_at11/115+22066811..22067634hypothetical protein
LOC_Os05g37810OsAffx.15200.3.S1_s_at4/115+22066811..22067634hypothetical protein
LOC_Os05g37820Os.9560.1.S1_at11/115+22072792..22076529Major Facilitator Superfamily protein, expressed
LOC_Os05g37830Os.14077.1.S1_at10/115+22077057..22079140expressed protein
LOC_Os05g37840OsAffx.15001.1.S1_at11/115+22080338..22080862hypothetical protein
LOC_Os05g37849NANA5+22090874..22091295NA
LOC_Os05g37860NANA5+22091550..22093565hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15200.2.S1_x_at--319--4616Chr05:22066947..22066971 (25 bp)
GCGACGCACGAGATGGAGCTGCACA
LOC_Os05g37810
OsAffx.15200.2.S1_x_at--1137--4032Chr05:22067018..22067042 (25 bp)
CGATTCCCTATCCTTTCCAGTGCAG
LOC_Os05g37810
OsAffx.15200.2.S1_x_at--116--10152Chr05:22067026..22067050 (25 bp)
TATCCTTTCCAGTGCAGCGACGGTG
LOC_Os05g37810
OsAffx.15200.2.S1_x_at--707--7491Chr05:22067107..22067131 (25 bp)
GTGGTTCGGGCAGCTGCATGTACAT
LOC_Os05g37810
OsAffx.15200.2.S1_x_at--668--9431Chr05:22067112..22067136 (25 bp)
TCGGGCAGCTGCATGTACATGAGGC
LOC_Os05g37810
OsAffx.15200.2.S1_x_at--657--90511Chr05:29541922..29541946 (25 bp)
TGCAGGTGATGAAGACGCCGCCGTT
NONE
OsAffx.15200.2.S1_x_at--555--2774Chr05:29541933..29541957 (25 bp)
AAGACGCCGCCGTTGAAGCACTCGG
NONE
OsAffx.15200.2.S1_x_at--690--7034Chr05:22067386..22067410 (25 bp)
GTACAAGTGCTCCTCGTACAAGTGC
LOC_Os05g37810
OsAffx.15200.2.S1_x_at--981--1995Chr05:22067441..22067465 (25 bp)
ACTCCCAGGCAACTGAGGCAAGCTC
LOC_Os05g37810
OsAffx.15200.2.S1_x_at--805--6011Chr05:22067549..22067573 (25 bp)
GAGAGTGTGTGCCTCCTCCGTTACC
LOC_Os05g37810
OsAffx.15200.2.S1_x_at--7--1734Chr05:22067571..22067595 (25 bp)
ACCAGCCGTCCGAGCGCGTGTGCGA
LOC_Os05g37810
Target Sequence 
GCGACGCACGAGATGGAGCTGCACAGGAGGGCCGCGGCCGCCGCTCATCCCTTTCCCCTCTCCTTCTCTTCCGATTCCCT
ATCCTTTCCAGTGCAGCGACGGTGGTCGGGCTGAGAAGGCGGCGACGGCGGTCTGGGCAAAGAAGGCGGCGGCGTCGGCG
GTGGTTCGGGCAGCTGCATGTACATGAGGCANNNNGNNAGGTNGNNNTAGTTGCAGGTGATGAAGACGCCGCCGTTGAAG
CACTCGGCGNGGGCGCAGCCGATCCTGGTGAAGTTGAGNCNAACNATGAAGACGAAGTGGCCGCACTTGTGGAAGTCGAC
GCCGGCGGTGCAGTTGCCGGTGTCCCTGTCGTACAAGTGCTCCTCGTACAAGTGCCGCTTNGGCAATCTNTGCCTCCGCC
GCCGGACTCCCAGGCAACTGAGGCAAGCTCCGCCTCCGCCGCNGNCCACGCGGGCGATCTCCGCCTCCNCAGNCGGANTT
CCGGACGAGCTNCGCCTCNGCCGNCGGTCGTCNGAGAGTGTGTGCCTCCTCCGTTACCAGCCGTCCGAGCGCGTGTGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15200.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis