Browse Element(s) Details


OsAffx.15222.1.S1_at

Description tigr:9634.m00082
TID=OsAffx.15222.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g018309/11hypothetical protein
LOC_Os08g151492/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01780Os.52860.1.A1_at11/116+449988..452733expressed protein
LOC_Os06g01790Os.52389.1.S1_x_at11/116+453863..456206expressed protein
LOC_Os06g01800OsAffx.15220.1.S1_s_at11/116+457997..464513retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01800Os.55780.1.S1_at10/116+457997..464513retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01800OsAffx.15220.2.S1_s_at8/116+457997..464513retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01800Os.48472.1.A1_at7/116+457997..464513retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01800OsAffx.14814.1.S1_at1/116+457997..464513retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01810NANA6+465385..466183hypothetical protein
LOC_Os06g01820OsAffx.10379.1.A1_at2/116+469319..470927hypothetical protein
LOC_Os06g01820Os.51646.1.S1_at1/116+469319..470927hypothetical protein
LOC_Os06g01830OsAffx.15222.1.S1_at9/116+472151..472577hypothetical protein
LOC_Os06g01840Os.12745.1.S1_at11/116+476099..478173Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01850Os.10696.1.S1_at11/116+478199..480658Ferredoxin-NADP reductase, leaf isozyme, chloroplast precursor, putative, expressed
LOC_Os06g01860Os.36672.1.S1_at11/116+483347..484309expressed protein
LOC_Os06g01860Os.36672.2.S1_x_at11/116+483347..484309expressed protein
LOC_Os06g01870NANA6+488917..489695hypothetical protein
LOC_Os06g01879NANA6+497435..498193hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009813biological_processflavonoid biosynthesis
GO:0019748biological_processsecondary metabolism
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0045431molecular_functionflavonol synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15222.1.S1_at--1061--45119Chr12:20197181..20197350 (25 bp)
GCCGCCGCCGAGGTTAGGATTAATC
NONE
OsAffx.15222.1.S1_at--986--45118Chr12:20196884..20197353 (25 bp)
GCCGCCGAGGTTAGGATTAATCTGG
NONE
OsAffx.15222.1.S1_at--1051--9916Chr12:6426422..6426446 (25 bp)
AGGATTAATCTGGACCGTCCATTCG
NONE
OsAffx.15222.1.S1_at--634--3058Chr06:472451..472475 (25 bp)
AATCTGGACCGTCCATTCGATCGAA
LOC_Os06g01830
OsAffx.15222.1.S1_at--118--8512Chr06:472455..472479 (25 bp)
TGGACCGTCCATTCGATCGAACGGC
LOC_Os06g01830
OsAffx.15222.1.S1_at--387--7254Chr12:20197358..20197380 (23 bp)
GTCCATTCGATCGAACGGCTCCAGA
NONE
OsAffx.15222.1.S1_at--660--3593Chr12:20197360..20197380 (21 bp)
CATTCGATCGAACGGCTCCAGATGC
NONE
OsAffx.15222.1.S1_at--31--9371Chr06:472471..472495 (25 bp)
TCGAACGGCTCCAGATGCTCCCGTG
LOC_Os06g01830
OsAffx.15222.1.S1_at--80--5252Chr06:472495..472519 (25 bp)
GTCGGGCCGCCGACCTATTGGGCCA
LOC_Os06g01830
OsAffx.15222.1.S1_at--109--4232Chr06:472504..472528 (25 bp)
CCGACCTATTGGGCCACCGAATGGA
LOC_Os06g01830
OsAffx.15222.1.S1_at--191--4415Chr12:26109060..26109084 (25 bp)
GCCACCGAATGGAGGATGCAAAATG
NONE
Target Sequence 
GCCGCCGCCGAGGTTAGGATTAATCTGGACCGTCCATTCGATCGAACGGCTCCAGATGCTCCCGTGTCGGGCCGCCGACC
TATTGGGCCACCGAATGGAGGATGCAAAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15222.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis