Browse Element(s) Details


OsAffx.15248.1.S1_s_at

Description gb:NM_185468.1
DB_XREF= gi:34898021
TID=OsAffx.15248.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0363011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03580Os.4458.1.S1_at11/116+1382619..1385078Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g03590NANA6+1386981..1387505transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g03600Os.4459.2.S1_x_at11/116+1388083..1394802transcriptional co-regulator family protein, putative, expressed
LOC_Os06g03610Os.44814.2.S1_at5/116+1397432..1399969protein kinase family protein, putative
LOC_Os06g03620NANA6+1400862..1401152hypothetical protein
LOC_Os06g03630OsAffx.15248.1.S1_s_at11/116+1404688..1405608hypothetical protein
LOC_Os06g03630OsAffx.15248.1.S1_at11/116+1404688..1405608hypothetical protein
LOC_Os06g03640Os.10179.1.S1_at11/116+1413222..1415364BAG domain-containing protein, putative, expressed
LOC_Os06g03650NANA6+1420577..1420819expressed protein
LOC_Os06g03660Os.4462.1.S1_a_at11/116+1422798..1426674Peroxisomal membrane protein PEX11-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15248.1.S1_s_at--672--9371Chr06:1405398..1405514 (25 bp)
TCGACCTCCGGTTGCGGCAGCTGGA
LOC_Os06g03630
OsAffx.15248.1.S1_s_at--537--3411Chr06:1405318..1405342 (25 bp)
CAGCACAGCAAGTCGCTGCCGGCGG
LOC_Os06g03630
OsAffx.15248.1.S1_s_at--549--3931Chr06:1405293..1405317 (25 bp)
CGGCGCTGCAGCATGTGCAGGCGAA
LOC_Os06g03630
OsAffx.15248.1.S1_s_at--1119--2871Chr06:1405270..1405294 (25 bp)
AAGGGCAGCCTGATGGACCGCCTCA
LOC_Os06g03630
OsAffx.15248.1.S1_s_at--700--8871Chr06:1405260..1405284 (25 bp)
TGATGGACCGCCTCAACCTGCTCGA
LOC_Os06g03630
OsAffx.15248.1.S1_s_at--870--9711Chr06:1405248..1405272 (25 bp)
TCAACCTGCTCGAGTCACGCATCAG
LOC_Os06g03630
OsAffx.15248.1.S1_s_at--809--6091Chr06:1405237..1405261 (25 bp)
GAGTCACGCATCAGGCAGCTCAGCT
LOC_Os06g03630
OsAffx.15248.1.S1_s_at--506--9631Chr06:1405227..1405251 (25 bp)
TCAGGCAGCTCAGCTGCGAGCTGGA
LOC_Os06g03630
OsAffx.15248.1.S1_s_at--1013--1571Chr06:1405221..1405245 (25 bp)
AGCTCAGCTGCGAGCTGGACGTCGC
LOC_Os06g03630
OsAffx.15248.1.S1_s_at--709--3811Chr06:1405123..1405147 (25 bp)
CTGCCGGAGCCGTGCAAACACCAGG
LOC_Os06g03630
OsAffx.15248.1.S1_s_at--611--8071Chr06:1405118..1405142 (25 bp)
GGAGCCGTGCAAACACCAGGCGCCG
LOC_Os06g03630
Target Sequence 
TCGACCTCCGGTTGCGGCAGCTGGAGGAGCAGCGGCGGGCGAATGCCGGCGACGGCGACGGCGGGCCGGCGGCGCACCAC
CAGCACAGCAAGTCGCTGCCGGCGGCGGCGCTGCAGCATGTGCAGGCGAAGGGCAGCCTGATGGACCGCCTCAACCTGCT
CGAGTCACGCATCAGGCAGCTCAGCTGCGAGCTGGACGTCGCGGCGGCGGCCGGCGGCTCGAGCGTGCCGGCGGTGGCGC
GGCCGGCCGAGGACCGCGCGTGGTCGGAGCCGCCGCTGCCGGAGCCGTGCAAACACCAGGCGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15248.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis