Browse Element(s) Details


Os.44814.2.S1_at

Description gb:NM_185467.1
DB_XREF= gi:34898019
TID=Os.44814.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44814 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to putative receptor-like protein kinase (AL035679) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) Similar to putative receptor-like protein kinase (AL035679) (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g036105/11protein kinase family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03560Os.52527.1.S1_s_at11/116+1370853..1374402oligopeptide transporter 9, putative, expressed
LOC_Os06g03570Os.48018.1.S1_at11/116+1376617..1378368pentatricopeptide, putative, expressed
LOC_Os06g03580Os.4458.1.S1_at11/116+1382619..1385078Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g03590NANA6+1386981..1387505transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g03600Os.4459.2.S1_x_at11/116+1388083..1394802transcriptional co-regulator family protein, putative, expressed
LOC_Os06g03610Os.44814.2.S1_at5/116+1397432..1399969protein kinase family protein, putative
LOC_Os06g03620NANA6+1400862..1401152hypothetical protein
LOC_Os06g03630OsAffx.15248.1.S1_s_at11/116+1404688..1405608hypothetical protein
LOC_Os06g03630OsAffx.15248.1.S1_at11/116+1404688..1405608hypothetical protein
LOC_Os06g03640Os.10179.1.S1_at11/116+1413222..1415364BAG domain-containing protein, putative, expressed
LOC_Os06g03650NANA6+1420577..1420819expressed protein
LOC_Os06g03660Os.4462.1.S1_a_at11/116+1422798..1426674Peroxisomal membrane protein PEX11-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44814.2.S1_at--780--1591Chr06:1397742..1397766 (25 bp)
AGCGGAAGGGCCTCATCGAGAAGAT
LOC_Os06g03610
Os.44814.2.S1_at--161--1931Chr06:1397695..1397719 (25 bp)
ACGGTGAACCAGGAGTCGCTCAACA
LOC_Os06g03610
Os.44814.2.S1_at--1123--1711Chr06:1397688..1397712 (25 bp)
ACCAGGAGTCGCTCAACAAGTTCGC
LOC_Os06g03610
Os.44814.2.S1_at--530--1231Chr06:1397637..1397661 (25 bp)
AGTTCGGCAGCGACAGGATCTCCAT
LOC_Os06g03610
Os.44814.2.S1_at--878--1631Chr06:1397629..1397653 (25 bp)
AGCGACAGGATCTCCATGGGCGACG
LOC_Os06g03610
Os.44814.2.S1_at--545--4991Chr06:1397377..1397401 (25 bp)
GCATGATGCAGTGATCGATCGAGAT
NONE
Os.44814.2.S1_at--342--6551Chr06:1397355..1397379 (25 bp)
GATTATTTCATCATCAATCCATCGA
NONE
Os.44814.2.S1_at--1158--471Chr06:1397331..1397355 (25 bp)
ATCGTCGCGGTGGAACGTAAACTGA
NONE
Os.44814.2.S1_at--424--5211Chr06:1397292..1397316 (25 bp)
GAATTACTTGTCGATTTCCTGCCCG
NONE
Os.44814.2.S1_at--1127--8691Chr06:1397284..1397308 (25 bp)
TGTCGATTTCCTGCCCGATTTAAGA
NONE
Os.44814.2.S1_at--889--4231Chr06:1397270..1397294 (25 bp)
CCGATTTAAGATGGCCGGTCGCAGT
NONE
Target Sequence 
AGCGGAAGGGCCTCATCGAGAAGATCATGGACCCCAAGCTCGCCGGGACGGTGAACCAGGAGTCGCTCAACAAGTTCGCC
GAGGCCGCCGAGAAGTGCCTCGCCGAGTTCGGCAGCGACAGGATCTCCATGGGCGACGTGCTCTGGAACCTCGAGTACGC
GCTCCAGCTGCAGGACGCCAACCCGCCCGAGGGGGCCGACAAGCCAGCCGACCACGACGGCGCCGGCGCGGCCCCGGCGA
CCTCCTCCGGCTCCGGCGTCTCCACCGTGCCCGACGTGTCCACCACCGCCGCCGGCGAGATGTTCGCGCAGCTCGCCGAC
ATGAAGGGGAGCAGCATGCATGATGCAGTGATCGATCGAGATTATTTCATCATCAATCCATCGATCGTCGCGGTGGAACG
TAAACTGAAAGCTATCAAAATCGAATTACTTGTCGATTTCCTGCCCGATTTAAGATGGCCGGTCGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44814.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis