Browse Element(s) Details


Os.48018.1.S1_at

Description gb:NM_185464.1
DB_XREF= gi:34898013
TID=Os.48018.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.48018 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to Arabidopsis thaliana chromosome II BAC T27A16 genomic sequence; hypothetical protein. (AC005496) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) Similar to Arabidopsis thaliana chromosome II BAC T27A16 genomic sequence; hypothetical protein. (AC005496) (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0357011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03510OsAffx.5378.3.A1_at11/116+1352865..1355327expressed protein
LOC_Os06g03510OsAffx.22016.1.S1_at1/116+1352865..1355327expressed protein
LOC_Os06g03520Os.4453.1.S1_at11/116+1360369..1361508expressed protein
LOC_Os06g03530Os.45910.1.S2_at11/116+1362000..1366554pentatricopeptide, putative, expressed
LOC_Os06g03530Os.45910.1.S1_at11/116+1362000..1366554pentatricopeptide, putative, expressed
LOC_Os06g03540Os.17167.1.S1_at11/116+1363911..1367984oligopeptide transporter 9, putative, expressed
LOC_Os06g03540Os.34161.2.S1_x_at1/116+1363911..1367984oligopeptide transporter 9, putative, expressed
LOC_Os06g03550OsAffx.4705.1.S1_at11/116+1369307..1369864hypothetical protein
LOC_Os06g03560Os.52527.1.S1_s_at11/116+1370853..1374402oligopeptide transporter 9, putative, expressed
LOC_Os06g03570Os.48018.1.S1_at11/116+1376617..1378368pentatricopeptide, putative, expressed
LOC_Os06g03580Os.4458.1.S1_at11/116+1382619..1385078Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g03590NANA6+1386981..1387505transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g03600Os.4459.2.S1_x_at11/116+1388083..1394802transcriptional co-regulator family protein, putative, expressed
LOC_Os06g03610Os.44814.2.S1_at5/116+1397432..1399969protein kinase family protein, putative
LOC_Os06g03620NANA6+1400862..1401152hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48018.1.S1_at--1082--2331Chr06:1377790..1377814 (25 bp)
AAACCAGATGGTATTACTTTTGTTG
LOC_Os06g03570
Os.48018.1.S1_at--663--7131Chr06:1377817..1377841 (25 bp)
GTCATCTTGGCTTGTACCCATGGAG
LOC_Os06g03570
Os.48018.1.S1_at--1011--5291Chr06:1377853..1377877 (25 bp)
GAAGGCAAGCTATTCTTTGACTCGA
LOC_Os06g03570
Os.48018.1.S1_at--773--4871Chr06:1377861..1377885 (25 bp)
GCTATTCTTTGACTCGATGGAAGCA
LOC_Os06g03570
Os.48018.1.S1_at--179--7171Chr06:1377893..1377917 (25 bp)
GTCTGAAACCGAGAATTGAGCACTA
LOC_Os06g03570
Os.48018.1.S1_at--364--7311Chr06:1377944..1377968 (25 bp)
GTGCTGGTCTCCTGATTGAATCATA
LOC_Os06g03570
Os.48018.1.S1_at--251--6591Chr06:1377975..1377999 (25 bp)
GATTGCGAGCATGCCAGTGGAGCCT
LOC_Os06g03570
Os.48018.1.S1_at--223--3471Chr06:1377989..1378013 (25 bp)
CAGTGGAGCCTGACGCTGTCATCTG
LOC_Os06g03570
Os.48018.1.S1_at--1066--7551Chr06:1378016..1378040 (25 bp)
GGGCCTTGCTTGGTGCTTGCAGCTT
LOC_Os06g03570
Os.48018.1.S1_at--179--9051Chr06:1378033..1378057 (25 bp)
TGCAGCTTCCATGGCAATGTAGAAC
LOC_Os06g03570
Os.48018.1.S1_at--112--271Chr06:1378134..1378158 (25 bp)
ATATGCGTCATCTGGCAAATGGGAT
LOC_Os06g03570
Target Sequence 
AAACCAGATGGTATTACTTTTGTTGGGGTCATCTTGGCTTGTACCCATGGAGGTTTGGTGAATGAAGGCAAGCTATTCTT
TGACTCGATGGAAGCAGAGTTTNGTCTGAAACCGAGAATTGAGCACTATGGCTGCATGGTTGACCTTCTCGGGCGTGCTG
GTCTCCTGATTGAATCATACAGTCTGATTGCGAGCATGCCAGTGGAGCCTGACGCTGTCATCTGGGGGGCCTTGCTTGGT
GCTTGCAGCTTCCATGGCAATGTAGAACTAGCAGAATTAGCAATGGACAAGCTCATCCACCTTGAGCCACAAAACACGGN
AAACCTAGTGNTCCTTTCAAACATATATGCGTCATCTGGCAAATGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48018.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis