Browse Element(s) Details


Os.45910.1.S2_at

Description gb:AK072112.1
DB_XREF= gi:32982135
TID=Os.45910.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.45910 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to putative salt-inducible protein (AC006248) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013121K07, full insert sequence.
FL= gb:AK109698.1 gb:AK072112.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0353011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03490NANA6+1340119..1340815expressed protein
LOC_Os06g03500OsAffx.10363.1.S1_at11/116+1346281..1350184NBS-LRR disease resistance protein, putative, expressed
LOC_Os06g03510OsAffx.5378.3.A1_at11/116+1352865..1355327expressed protein
LOC_Os06g03510OsAffx.22016.1.S1_at1/116+1352865..1355327expressed protein
LOC_Os06g03520Os.4453.1.S1_at11/116+1360369..1361508expressed protein
LOC_Os06g03530Os.45910.1.S2_at11/116+1362000..1366554pentatricopeptide, putative, expressed
LOC_Os06g03530Os.45910.1.S1_at11/116+1362000..1366554pentatricopeptide, putative, expressed
LOC_Os06g03540Os.17167.1.S1_at11/116+1363911..1367984oligopeptide transporter 9, putative, expressed
LOC_Os06g03540Os.34161.2.S1_x_at1/116+1363911..1367984oligopeptide transporter 9, putative, expressed
LOC_Os06g03550OsAffx.4705.1.S1_at11/116+1369307..1369864hypothetical protein
LOC_Os06g03560Os.52527.1.S1_s_at11/116+1370853..1374402oligopeptide transporter 9, putative, expressed
LOC_Os06g03570Os.48018.1.S1_at11/116+1376617..1378368pentatricopeptide, putative, expressed
LOC_Os06g03580Os.4458.1.S1_at11/116+1382619..1385078Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g03590NANA6+1386981..1387505transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g03600Os.4459.2.S1_x_at11/116+1388083..1394802transcriptional co-regulator family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45910.1.S2_at--638--9431Chr06:1365654..1365678 (25 bp)
TCTCGTAGGCCTTTGTGTCGAAATG
LOC_Os06g03530
Os.45910.1.S2_at--390--6511Chr06:1365703..1365727 (25 bp)
GATATTGTACTTTTGGCCAGTTGAG
LOC_Os06g03530
Os.45910.1.S2_at--449--8691Chr06:1365761..1365785 (25 bp)
TGTGCCTTGTAGAAATTGAACCAGT
LOC_Os06g03530
Os.45910.1.S2_at--193--5431Chr06:1365778..1365802 (25 bp)
GAACCAGTAAGCAATCGGTGTGATT
LOC_Os06g03530
Os.45910.1.S2_at--887--8291Chr06:1365855..1365879 (25 bp)
GGCTAGCAAGAGGACTCCCGAGGTA
LOC_Os06g03530
Os.45910.1.S2_at--303--7511Chr06:1365890..1365914 (25 bp)
GTGGACCAGTCGAGACCGATCGCGC
LOC_Os06g03530
Os.45910.1.S2_at--210--1391Chr06:1365932..1365956 (25 bp)
AGACCTGAGCCGAGCTGCTGTGCAA
LOC_Os06g03530
Os.45910.1.S2_at--901--4591Chr06:1366037..1366061 (25 bp)
GCGAAGCTGCAGATGAATGCCACAA
LOC_Os06g03530
Os.45910.1.S2_at--918--5371Chr06:1366063..1366087 (25 bp)
GAAGAACTGGTTGCGCGTCAGCCCA
LOC_Os06g03530
Os.45910.1.S2_at--119--9251Chr06:1366103..1366127 (25 bp)
TCCTTCTCGTGAAGCGCCCTGATGA
LOC_Os06g03530
Os.45910.1.S2_at--676--2491Chr06:1366205..1366229 (25 bp)
AACATTTGTACCAAGTTCTTTGGCT
LOC_Os06g03530
Target Sequence 
TCTCGTAGGCCTTTGTGTCGAAATGGAAATGAGAATCAACAATGCTTGAGATATTGTACTTTTGGCCAGTTGAGGTGAAG
AGACCATCAGAAAATATGGGGAAGTTTTGTGCCTTGTAGAAATTGAACCAGTAAGCAATCGGTGTGATTATGTACATGAT
GAAGAAGAAGCCAGCAGCAACATTTGCAGTGGCAAACCATGGGCTAGCAAGAGGACTCCCGAGGTAGGAGGAGACGGTGG
ACCAGTCGAGACCGATCGCGCCAATGCCAAGGCCACTGAGACCTGAGCCGAGCTGCTGTGCAAGCACAGAGTGGGGGAAG
ACCCAGCAGATCCAGGAGAGGGAGGTGAGCATCTGGAACAGGTAGCCTGGGAAGATGTAGTATGCGAAGCTGCAGATGAA
TGCCACAAGGAAGAACTGGTTGCGCGTCAGCCCACCTTTGCTCCTTGCTTCCTTCTCGTGAAGCGCCCTGATGAGCAAAA
TACATTTGCAAATGTGTAAGTTGCATTTAGTACCAAGTTCTTTGGCTTTAAAAGGTCATTTGATCCTTGCAAACATTTGT
ACCAAGTTCTTTGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45910.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis