Browse Element(s) Details


OsAffx.10363.1.S1_at

Description tigr:9634.m00255
TID=OsAffx.10363.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0350011/11NBS-LRR disease resistance protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03460OsAffx.22848.4.S1_at2/116+1320688..1321896retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03460OsAffx.22848.4.S1_x_at2/116+1320688..1321896retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03460OsAffx.22848.3.S1_x_at1/116+1320688..1321896retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03474Os.45173.5.S1_x_at4/116+1326586..1332121retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03474Os.45173.1.S1_x_at3/116+1326586..1332121retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03490NANA6+1340119..1340815expressed protein
LOC_Os06g03500OsAffx.10363.1.S1_at11/116+1346281..1350184NBS-LRR disease resistance protein, putative, expressed
LOC_Os06g03510OsAffx.5378.3.A1_at11/116+1352865..1355327expressed protein
LOC_Os06g03510OsAffx.22016.1.S1_at1/116+1352865..1355327expressed protein
LOC_Os06g03520Os.4453.1.S1_at11/116+1360369..1361508expressed protein
LOC_Os06g03530Os.45910.1.S2_at11/116+1362000..1366554pentatricopeptide, putative, expressed
LOC_Os06g03530Os.45910.1.S1_at11/116+1362000..1366554pentatricopeptide, putative, expressed
LOC_Os06g03540Os.17167.1.S1_at11/116+1363911..1367984oligopeptide transporter 9, putative, expressed
LOC_Os06g03540Os.34161.2.S1_x_at1/116+1363911..1367984oligopeptide transporter 9, putative, expressed
LOC_Os06g03550OsAffx.4705.1.S1_at11/116+1369307..1369864hypothetical protein
LOC_Os06g03560Os.52527.1.S1_s_at11/116+1370853..1374402oligopeptide transporter 9, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10363.1.S1_at--516--3491Chr06:1346823..1346847 (25 bp)
CATGGACGTATTCGCGTGATGCCCG
LOC_Os06g03500
OsAffx.10363.1.S1_at--641--8851Chr06:1346807..1346831 (25 bp)
TGATGCCCGACTCTTTTAGGAACCT
LOC_Os06g03500
OsAffx.10363.1.S1_at--954--9611Chr06:1346702..1346726 (25 bp)
TCATGCTCCTGAATCTCGATGGCAG
LOC_Os06g03500
OsAffx.10363.1.S1_at--61--2351Chr06:1346647..1346671 (25 bp)
AAAGCACGAGTTCCCAAATCTCAAG
LOC_Os06g03500
OsAffx.10363.1.S1_at--841--5911Chr06:1346622..1346646 (25 bp)
GAGCTTCGTATCAGTATGCTGTCCG
LOC_Os06g03500
OsAffx.10363.1.S1_at--546--6511Chr06:1346582..1346606 (25 bp)
GATTTGAGAAGGACGCCTTGCCCCA
LOC_Os06g03500
OsAffx.10363.1.S1_at--590--6431Chr06:1346522..1346546 (25 bp)
GATCAGGGATTGTTGGCATCAAGCA
LOC_Os06g03500
OsAffx.10363.1.S1_at--818--4811Chr06:1346488..1346512 (25 bp)
GCTCAACGAGATTTCACTTGGGTGT
LOC_Os06g03500
OsAffx.10363.1.S1_at--307--1931Chr06:1346437..1346461 (25 bp)
ACAGGAAGTAAAGGCGCACCCCAAG
LOC_Os06g03500
OsAffx.10363.1.S1_at--428--8331Chr06:1346366..1346390 (25 bp)
GGCTCCCTGTAGTCCTGACGAAAGA
LOC_Os06g03500
OsAffx.10363.1.S1_at--379--931Chr06:1346312..1346336 (25 bp)
AGGAATCCGTCCATGACGATGCCGG
LOC_Os06g03500
Target Sequence 
CATGGACGTATTCGCGTGATGCCCGACTCTTTTAGGAACCTTAAGCAGCTGCGGAAGATTTTTTTGCGGCTAAGCGAACT
AGATGGTAGAGCCATAGAGATACTTGGAACACTACCCAACCTCATGCTCCTGAATCTCGATGGCAGAGCATATGTTGGGA
ATGAATTAGCATTCAAAAAGCACGAGTTCCCAAATCTCAAGGAGCTTCGTATCAGTATGCTGTCCGAACTAAGAGGGATA
AGATTTGAGAAGGACGCCTTGCCCCACATGGAAAGAATGGAAATCGAATGTTGCCAGTTGAGATCAGGGATTGTTGGCAT
CAAGCACCTCGAACAGCTCAACGAGATTTCACTTGGGTGTGATGTGGCGGGGCTTGATCTGCTGGAACAGGAAGTAAAGG
CGCACCCCAAGACACCCGCATTGCGGCTGCTTCAAGACCGAAGCAAAATCGACTTGGGGCTCCCTGTAGTCCTGACGAAA
GACGAAGGCTCCAATGTTGAAGAGGAAGCAAAGGAATCCGTCCATGACGATGCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10363.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis