Browse Element(s) Details


OsAffx.22016.1.S1_at

Description gb:NM_188901.1
DB_XREF= gi:34904885
GEN=OSJNBb0011E04.11
TID=OsAffx.22016.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GlimmerM (OSJNBb0011E04.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g035101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03474Os.45173.5.S1_x_at4/116+1326586..1332121retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03474Os.45173.1.S1_x_at3/116+1326586..1332121retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03490NANA6+1340119..1340815expressed protein
LOC_Os06g03500OsAffx.10363.1.S1_at11/116+1346281..1350184NBS-LRR disease resistance protein, putative, expressed
LOC_Os06g03510OsAffx.5378.3.A1_at11/116+1352865..1355327expressed protein
LOC_Os06g03510OsAffx.22016.1.S1_at1/116+1352865..1355327expressed protein
LOC_Os06g03520Os.4453.1.S1_at11/116+1360369..1361508expressed protein
LOC_Os06g03530Os.45910.1.S2_at11/116+1362000..1366554pentatricopeptide, putative, expressed
LOC_Os06g03530Os.45910.1.S1_at11/116+1362000..1366554pentatricopeptide, putative, expressed
LOC_Os06g03540Os.17167.1.S1_at11/116+1363911..1367984oligopeptide transporter 9, putative, expressed
LOC_Os06g03540Os.34161.2.S1_x_at1/116+1363911..1367984oligopeptide transporter 9, putative, expressed
LOC_Os06g03550OsAffx.4705.1.S1_at11/116+1369307..1369864hypothetical protein
LOC_Os06g03560Os.52527.1.S1_s_at11/116+1370853..1374402oligopeptide transporter 9, putative, expressed
LOC_Os06g03570Os.48018.1.S1_at11/116+1376617..1378368pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22016.1.S1_at--740--3311Chr08:17655619..17655643 (25 bp)
CACATGTGGGCGGAGAATTTTCAGA
NONE
OsAffx.22016.1.S1_at--605--3291Chr08:17655588..17655612 (25 bp)
CACCGAATACGCACCGTTTTCAGGA
NONE
OsAffx.22016.1.S1_at--933--312Chr09:11827614..11827637 (24 bp)
ATACGCACCGTTTTCAGGATAGGCC
NONE
OsAffx.22016.1.S1_at--32--1673Chr09:11826871..11826892 (22 bp)
ACCGTTTTCAGGATAGGCCACTCAA
NONE
OsAffx.22016.1.S1_at--137--1013Chr09:11826877..11826901 (25 bp)
AGGATAGGCCACTCAATTCGCACTA
NONE
OsAffx.22016.1.S1_at--1038--273Chr09:11826880..11826904 (25 bp)
ATAGGCCACTCAATTCGCACTACTT
NONE
OsAffx.22016.1.S1_at--490--5112Chr09:11826896..11826997 (25 bp)
GCACTACTTTCAGAACATGCCATTT
NONE
OsAffx.22016.1.S1_at--698--3533Chr03:3314903..3314927 (25 bp)
CATGCCATTTGGACGCGAATTTTCT
NONE
OsAffx.22016.1.S1_at--942--5792Chr03:3314914..3314938 (25 bp)
GACGCGAATTTTCTTCAGTCCGTGA
NONE
OsAffx.22016.1.S1_at--547--5212Chr03:3314919..3314943 (25 bp)
GAATTTTCTTCAGTCCGTGACACTC
NONE
OsAffx.22016.1.S1_at--138--9311Chr08:17655124..17655148 (25 bp)
TCCCCTATACCGACGAGCTCATGTT
NONE
Target Sequence 
CACATGTGGGCGGAGAATTTTCAGAATATGCCACCGAATACGCACCGTTTTCAGGATAGGCCACTCAATTCGCACTACTT
TCAGAACATGCCATTTGGACGCGAATTTTCTTCAGTCCGTGACACTCCGTCTCCCGAAGCCGCGCGGCGTCAGTTCCTCT
TCTCTCGCGACGAGCTCCTCTTCCCCTGCCGGCGAGCTCCTCCTTCCCTACACCGGTGAGCTCTCCCTCCCCCACACAGG
CGAGCTCCTCCCCTACACCGGCGAGCTCCACCTTCCCCACACCGGCGAGCTCCTCCTCCCCCACATCGGCGAGATCCCCC
TCCCCCAACGTCGGCGAGCTCCTCCTCCCCCAACACCTGCGAGCTCCCCCTCCCCCCACACCGGCGAGATCCCCCTCCCC
CAACGTCGACGAGCTCCTCCTCCCCCAACACCGGCGAGCTCCCCCTCCCCCCACACCGGCGAGCTCCCCCTCCCCCAACG
CCGGCAAGCTCCTTCTCCCCTATACCGACGAGCTCATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22016.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis