Browse Element(s) Details


OsAffx.4705.1.S1_at

Description tigr:9634.m00260
TID=OsAffx.4705.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0355011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03500OsAffx.10363.1.S1_at11/116+1346281..1350184NBS-LRR disease resistance protein, putative, expressed
LOC_Os06g03510OsAffx.5378.3.A1_at11/116+1352865..1355327expressed protein
LOC_Os06g03510OsAffx.22016.1.S1_at1/116+1352865..1355327expressed protein
LOC_Os06g03520Os.4453.1.S1_at11/116+1360369..1361508expressed protein
LOC_Os06g03530Os.45910.1.S2_at11/116+1362000..1366554pentatricopeptide, putative, expressed
LOC_Os06g03530Os.45910.1.S1_at11/116+1362000..1366554pentatricopeptide, putative, expressed
LOC_Os06g03540Os.17167.1.S1_at11/116+1363911..1367984oligopeptide transporter 9, putative, expressed
LOC_Os06g03540Os.34161.2.S1_x_at1/116+1363911..1367984oligopeptide transporter 9, putative, expressed
LOC_Os06g03550OsAffx.4705.1.S1_at11/116+1369307..1369864hypothetical protein
LOC_Os06g03560Os.52527.1.S1_s_at11/116+1370853..1374402oligopeptide transporter 9, putative, expressed
LOC_Os06g03570Os.48018.1.S1_at11/116+1376617..1378368pentatricopeptide, putative, expressed
LOC_Os06g03580Os.4458.1.S1_at11/116+1382619..1385078Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g03590NANA6+1386981..1387505transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g03600Os.4459.2.S1_x_at11/116+1388083..1394802transcriptional co-regulator family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4705.1.S1_at--998--671Chr06:1369337..1369361 (25 bp)
ATGAGCCCCCAAGAAACAGAGTGCT
LOC_Os06g03550
OsAffx.4705.1.S1_at--175--3431Chr06:1369353..1369377 (25 bp)
CAGAGTGCTCATGGGATGCTGGATC
LOC_Os06g03550
OsAffx.4705.1.S1_at--910--8511Chr06:1369372..1369396 (25 bp)
TGGATCTGGGACAGGGACATTGATC
LOC_Os06g03550
OsAffx.4705.1.S1_at--658--8131Chr06:1369386..1369410 (25 bp)
GGACATTGATCCTGTCGTTTAACTG
LOC_Os06g03550
OsAffx.4705.1.S1_at--700--8851Chr06:1369392..1369416 (25 bp)
TGATCCTGTCGTTTAACTGTTCTGA
LOC_Os06g03550
OsAffx.4705.1.S1_at--684--7191Chr06:1369399..1369423 (25 bp)
GTCGTTTAACTGTTCTGACTCCAAG
LOC_Os06g03550
OsAffx.4705.1.S1_at--131--3871Chr06:1369401..1369425 (25 bp)
CGTTTAACTGTTCTGACTCCAAGAA
LOC_Os06g03550
OsAffx.4705.1.S1_at--275--4391Chr06:1369774..1369793 (20 bp)
CCAAGGGTTATTTTGCATCATTTCA
LOC_Os06g03550
OsAffx.4705.1.S1_at--924--9031Chr06:1369782..1369806 (25 bp)
TGCATCATTTCATGGACTGTAATCC
LOC_Os06g03550
OsAffx.4705.1.S1_at--392--10311Chr06:1369789..1369813 (25 bp)
TTTCATGGACTGTAATCCGTTGATC
LOC_Os06g03550
OsAffx.4705.1.S1_at--604--5731Chr06:1369796..1369820 (25 bp)
GACTGTAATCCGTTGATCAATATCA
LOC_Os06g03550
Target Sequence 
ATGAGCCCCCAAGAAACAGAGTGCTCATGGGATGCTGGATCTGGGACAGGGACATTGATCCTGTCGTTTAACTGTTCTGA
CTCCAAGAAACCAAGGGTTATTTTGCATCATTTCATGGACTGTAATCCGTTGATCAATATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4705.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis