Browse Element(s) Details


Os.17167.1.S1_at

Description gb:BI812296
DB_XREF= gi:16578201
DB_XREF=D005D07
CLONE=D005D07
TID=Os.17167.1
CNT=11
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.17167 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) EST D25093(R3139) corresponds to a region of the predicted gene.~Similar to Arabidopsis thaliana BAC T12H20; isp4-like protein (AF080119) (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0354011/11oligopeptide transporter 9, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03490NANA6+1340119..1340815expressed protein
LOC_Os06g03500OsAffx.10363.1.S1_at11/116+1346281..1350184NBS-LRR disease resistance protein, putative, expressed
LOC_Os06g03510OsAffx.5378.3.A1_at11/116+1352865..1355327expressed protein
LOC_Os06g03510OsAffx.22016.1.S1_at1/116+1352865..1355327expressed protein
LOC_Os06g03520Os.4453.1.S1_at11/116+1360369..1361508expressed protein
LOC_Os06g03530Os.45910.1.S2_at11/116+1362000..1366554pentatricopeptide, putative, expressed
LOC_Os06g03530Os.45910.1.S1_at11/116+1362000..1366554pentatricopeptide, putative, expressed
LOC_Os06g03540Os.17167.1.S1_at11/116+1363911..1367984oligopeptide transporter 9, putative, expressed
LOC_Os06g03540Os.34161.2.S1_x_at1/116+1363911..1367984oligopeptide transporter 9, putative, expressed
LOC_Os06g03550OsAffx.4705.1.S1_at11/116+1369307..1369864hypothetical protein
LOC_Os06g03560Os.52527.1.S1_s_at11/116+1370853..1374402oligopeptide transporter 9, putative, expressed
LOC_Os06g03570Os.48018.1.S1_at11/116+1376617..1378368pentatricopeptide, putative, expressed
LOC_Os06g03580Os.4458.1.S1_at11/116+1382619..1385078Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g03590NANA6+1386981..1387505transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g03600Os.4459.2.S1_x_at11/116+1388083..1394802transcriptional co-regulator family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0015198molecular_functionoligopeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17167.1.S1_at--445--8291Chr06:1364342..1364366 (25 bp)
GGCATTCATGGCTGTTTTGATTTAC
LOC_Os06g03540
Os.17167.1.S1_at--202--6811Chr06:1364329..1364353 (25 bp)
GTTTTGATTTACTTGTGCCTAGGCT
LOC_Os06g03540
Os.17167.1.S1_at--564--9191Chr06:1364314..1364338 (25 bp)
TGCCTAGGCTTGGAGAACATCAGTT
LOC_Os06g03540
Os.17167.1.S1_at--1131--7991Chr06:1364267..1364291 (25 bp)
GGATGGATGTCCTCTGGCTTCTTGC
LOC_Os06g03540
Os.17167.1.S1_at--745--7431Chr06:1364229..1364253 (25 bp)
GTGTAGTTGTTGACGGATGCCCAGT
LOC_Os06g03540
Os.17167.1.S1_at--428--5751Chr06:1364218..1364242 (25 bp)
GACGGATGCCCAGTCTATACTTGAG
LOC_Os06g03540
Os.17167.1.S1_at--537--6371Chr06:1364193..1364217 (25 bp)
GATCTCCTATTGTATGTCAGTCCTG
LOC_Os06g03540
Os.17167.1.S1_at--1143--10351Chr06:1364107..1364131 (25 bp)
TTTTTTCCCAGACCATGTAAAGATG
LOC_Os06g03540
Os.17167.1.S1_at--387--7751Chr06:1364075..1364099 (25 bp)
GGTGTTGTATTATTGTATTCCTTGA
LOC_Os06g03540
Os.17167.1.S1_at--135--5571Chr06:1364025..1364049 (25 bp)
TGAAAGGTACTTATTTGGGTCACCA
LOC_Os06g03540
Os.17167.1.S1_at--1097--2971Chr06:1363971..1363995 (25 bp)
AATGTAGCATACTTGCGCGAAAGGA
LOC_Os06g03540
Target Sequence 
GGCATTCATGGCTGTTTTGATTTACTTGTGCCTAGGCTTGGAGAACATCAGTTTGAACTGGTGGGGCAATGACTTGGATG
GATGTCCTCTGGCTTCTTGCCCCACTGCTAAAGGTGTAGTTGTTGACGGATGCCCAGTCTATACTTGAGGATCTCCTATT
GTATGTCAGTCCTGGGGAGAATTTGGACAATCTTAAGGAGCATGTAGGGGCCAACGTAAATAGGATAAACACTGTTTTTT
TCCCAGACCATGTAAAGATGAGAAATTGGTGTTGTATTATTGTATTCCTTGAGTTTTCAGAATTGTAATGNANGTTTTGA
AAGGTACTTATTTGGGTCACCAAACCCNTTGTTATTCAACACTGGAAACNAAATGTAGCATACTTGCGCGAAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17167.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis