Browse Element(s) Details


Os.45910.1.S1_at

Description gb:AK109698.1
DB_XREF= gi:32994907
TID=Os.45910.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.45910 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to putative salt-inducible protein (AC006248) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-F03, full insert sequence.
FL= gb:AK109698.1 gb:AK072112.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0353011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03490NANA6+1340119..1340815expressed protein
LOC_Os06g03500OsAffx.10363.1.S1_at11/116+1346281..1350184NBS-LRR disease resistance protein, putative, expressed
LOC_Os06g03510OsAffx.5378.3.A1_at11/116+1352865..1355327expressed protein
LOC_Os06g03510OsAffx.22016.1.S1_at1/116+1352865..1355327expressed protein
LOC_Os06g03520Os.4453.1.S1_at11/116+1360369..1361508expressed protein
LOC_Os06g03530Os.45910.1.S2_at11/116+1362000..1366554pentatricopeptide, putative, expressed
LOC_Os06g03530Os.45910.1.S1_at11/116+1362000..1366554pentatricopeptide, putative, expressed
LOC_Os06g03540Os.17167.1.S1_at11/116+1363911..1367984oligopeptide transporter 9, putative, expressed
LOC_Os06g03540Os.34161.2.S1_x_at1/116+1363911..1367984oligopeptide transporter 9, putative, expressed
LOC_Os06g03550OsAffx.4705.1.S1_at11/116+1369307..1369864hypothetical protein
LOC_Os06g03560Os.52527.1.S1_s_at11/116+1370853..1374402oligopeptide transporter 9, putative, expressed
LOC_Os06g03570Os.48018.1.S1_at11/116+1376617..1378368pentatricopeptide, putative, expressed
LOC_Os06g03580Os.4458.1.S1_at11/116+1382619..1385078Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g03590NANA6+1386981..1387505transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g03600Os.4459.2.S1_x_at11/116+1388083..1394802transcriptional co-regulator family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45910.1.S1_at--64--1711Chr06:1363297..1363321 (25 bp)
ACCAAGCTTGCTGACGTACAACTCA
LOC_Os06g03530
Os.45910.1.S1_at--333--5751Chr06:1363309..1363333 (25 bp)
GACGTACAACTCACTTATTTCAGGA
LOC_Os06g03530
Os.45910.1.S1_at--1049--6131Chr06:1363392..1363416 (25 bp)
GAGGGTATGAACCAAATGCCATGAC
LOC_Os06g03530
Os.45910.1.S1_at--300--4431Chr06:1363409..1363433 (25 bp)
GCCATGACTTATGAGGCCTTGATCA
LOC_Os06g03530
Os.45910.1.S1_at--915--2291Chr06:1363485..1363509 (25 bp)
AAATGGTGTCTAGAGGTTGCAAGCC
LOC_Os06g03530
Os.45910.1.S1_at--406--8571Chr06:1363533..1363557 (25 bp)
TGGTTGATAGTCTTTCGGAGCCAAG
LOC_Os06g03530
Os.45910.1.S1_at--334--5551Chr06:1363586..1363610 (25 bp)
GAAACTGCAGCTTTATATGGTCGGT
LOC_Os06g03530
Os.45910.1.S1_at--747--271Chr06:1363600..1363624 (25 bp)
ATATGGTCGGTATTTCCTGGATGGT
LOC_Os06g03530
Os.45910.1.S1_at--528--3011Chr06:1363658..1363682 (25 bp)
AATGCAACTGATACTTCGAACAAGC
LOC_Os06g03530
Os.45910.1.S1_at--1149--10491Chr06:1363740..1363764 (25 bp)
TTCAATAGCAGTGTCCTTCTACAGA
LOC_Os06g03530
Os.45910.1.S1_at--27--10591Chr06:1363783..1363807 (25 bp)
TTCTCTGGGCTTGCTATTCCTGGGA
LOC_Os06g03530
Target Sequence 
ACCAAGCTTGCTGACGTACAACTCACTTATTTCAGGATTATGTGAAAATGAAGAGCTACAGGAGGCTGGGCGGGTGTGGG
ATGACATGGTTGAACGAGGGTATGAACCAAATGCCATGACTTATGAGGCCTTGATCAAGGGATTATGCAAAACAGGGAAG
CCAAATGAAGGGGCTACAGTCTTTGAGGAAATGGTGTCTAGAGGTTGCAAGCCAAGCAGCCTTCTTTTCCAAGTTTTGGT
TGATAGTCTTTCGGAGCCAAGACATGAGGATACCATTAGAAAAATTCTTGAAACTGCAGCTTTATATGGTCGGTATTTCC
TGGATGGTGATTCTTGGGAAATTTTTGTCAGGAAGGTGGTAAATGCAACTGATACTTCGAACAAGCATCTCGATTTAGTA
TTAGATATGTGATCATGTGGTGCTGAGAAATGTAATCATCAAATTCAATAGCAGTGTCCTTCTACAGANANANNANNANA
NNNNGGTTCTCTGGGCTTGCTATTCCTGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45910.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis