Browse Element(s) Details


Os.4458.1.S1_at

Description gb:AY207044.1
DB_XREF= gi:29164824
TID=Os.4458.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.4458 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) zinc-finger protein mRNA, complete cds.
PROD=zinc-finger protein
FL= gb:AY225189.1 gb:AK104425.1 gb:AY207044.1 gb:AK068302.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0358011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03520Os.4453.1.S1_at11/116+1360369..1361508expressed protein
LOC_Os06g03530Os.45910.1.S2_at11/116+1362000..1366554pentatricopeptide, putative, expressed
LOC_Os06g03530Os.45910.1.S1_at11/116+1362000..1366554pentatricopeptide, putative, expressed
LOC_Os06g03540Os.17167.1.S1_at11/116+1363911..1367984oligopeptide transporter 9, putative, expressed
LOC_Os06g03540Os.34161.2.S1_x_at1/116+1363911..1367984oligopeptide transporter 9, putative, expressed
LOC_Os06g03550OsAffx.4705.1.S1_at11/116+1369307..1369864hypothetical protein
LOC_Os06g03560Os.52527.1.S1_s_at11/116+1370853..1374402oligopeptide transporter 9, putative, expressed
LOC_Os06g03570Os.48018.1.S1_at11/116+1376617..1378368pentatricopeptide, putative, expressed
LOC_Os06g03580Os.4458.1.S1_at11/116+1382619..1385078Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g03590NANA6+1386981..1387505transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g03600Os.4459.2.S1_x_at11/116+1388083..1394802transcriptional co-regulator family protein, putative, expressed
LOC_Os06g03610Os.44814.2.S1_at5/116+1397432..1399969protein kinase family protein, putative
LOC_Os06g03620NANA6+1400862..1401152hypothetical protein
LOC_Os06g03630OsAffx.15248.1.S1_s_at11/116+1404688..1405608hypothetical protein
LOC_Os06g03630OsAffx.15248.1.S1_at11/116+1404688..1405608hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4458.1.S1_at--758--811Chr06:1383512..1383536 (25 bp)
ATGGTTTACATTACTACTATCACGG
LOC_Os06g03580
Os.4458.1.S1_at--1140--4771Chr06:1384044..1384068 (25 bp)
GCTGCCACACAGGATGATAACGATG
LOC_Os06g03580
Os.4458.1.S1_at--498--2311Chr06:1384189..1384213 (25 bp)
AAAGGCAGGCACTTGTGGAATCTGT
LOC_Os06g03580
Os.4458.1.S1_at--232--8851Chr06:1384238..1384262 (25 bp)
TGATCTGCTTATCTCCTACTTGGAG
LOC_Os06g03580
Os.4458.1.S1_at--661--3291Chr06:1384274..1384298 (25 bp)
CAAATCAGGCTTTTTCCCAAGGAAG
LOC_Os06g03580
Os.4458.1.S1_at--933--8231Chr06:1384298..1384470 (25 bp)
GGCAAACCATGATAACTGTCCTATA
LOC_Os06g03580
Os.4458.1.S1_at--829--751Chr06:1384470..1384494 (25 bp)
ATGTCTATCCGCTTTCAGACGCCGA
LOC_Os06g03580
Os.4458.1.S1_at--677--5531Chr06:1384495..1384519 (25 bp)
GAAACACTCATTACATTGGCTTGCA
LOC_Os06g03580
Os.4458.1.S1_at--634--8291Chr06:1384512..1384536 (25 bp)
GGCTTGCAAGCATAGTTACCATGAA
LOC_Os06g03580
Os.4458.1.S1_at--714--6591Chr06:1384560..1384799 (25 bp)
GATTGACAAGGCCTGCCCAGTTTGC
LOC_Os06g03580
Os.4458.1.S1_at--474--2871Chr06:1384807..1384827 (21 bp)
AAGTGTTTGGACCTTCCTAGCCTAG
LOC_Os06g03580
Target Sequence 
ATGGTTTACATTACTACTATCACGGAGAGAACAGCAGTGGTGAAGCAACAACCTCGAGAAATTCAGAAATCGACCAACAG
ATTGAGTATGACTTGGTGTTCGCTAGGCAGCTGCAGGCAATGGATAATCTGACAATTGAGACACCTGCAGATGAAGATGA
TGATATAAGCTGCGTACCCTCTCCATCTGACTCTGAAACCGATGAACCGGCAGAAGGCAACAACGAAGAGGCTGCCACAC
AGGATGATAACGATGATCCAGACAACATGACATACGAGCAAAGGCAGGCACTTGTGGAATCTGTAGGAAATGAGAACAGA
GGTTTATCTGATCTGCTTATCTCCTACTTGGAGACATGGAAGTACAAATCAGGCTTTTTCCCAAGGAAGGCAAACCATGA
TAACTGTCCTATATGTCTATCCGCTTTCAGACGCCGAGAAACACTCATTACATTGGCTTGCAAGCATAGTTACCATGAAG
GTTGTATTGCTAGATGGCTCAAGATTGACAAGGCCTGCCCAGTTTGCAAATATGAAGTGTTTGGACCTTCCTAGCCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4458.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis