Browse Element(s) Details


Os.4462.1.S1_a_at

Description gb:AK100186.1
DB_XREF= gi:32985395
TID=Os.4462.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4462 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs AU064537(E31904),AU082147(E31904) correspond to a region of the predicted gene.~Similar to Arabidopsis thaliana chromosome II BAC F4I18 genomic sequence; unknown protein. (AC004665) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023033L15, full insert sequence.
FL= gb:AK061048.1 gb:AK060186.1 gb:AK100186.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0366011/11Peroxisomal membrane protein PEX11-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03610Os.44814.2.S1_at5/116+1397432..1399969protein kinase family protein, putative
LOC_Os06g03620NANA6+1400862..1401152hypothetical protein
LOC_Os06g03630OsAffx.15248.1.S1_s_at11/116+1404688..1405608hypothetical protein
LOC_Os06g03630OsAffx.15248.1.S1_at11/116+1404688..1405608hypothetical protein
LOC_Os06g03640Os.10179.1.S1_at11/116+1413222..1415364BAG domain-containing protein, putative, expressed
LOC_Os06g03650NANA6+1420577..1420819expressed protein
LOC_Os06g03660Os.4462.1.S1_a_at11/116+1422798..1426674Peroxisomal membrane protein PEX11-1, putative, expressed
LOC_Os06g03670OsAffx.27442.1.S1_at11/116+1433743..1434837AP2 domain containing protein, expressed
LOC_Os06g03670Os.4463.1.S1_s_at11/116+1433743..1434837AP2 domain containing protein, expressed
LOC_Os06g03670Os.57517.1.S1_x_at1/116+1433743..1434837AP2 domain containing protein, expressed
LOC_Os06g03676OsAffx.27443.1.S1_at11/116+1437382..1444140SET domain-containing protein, putative, expressed
LOC_Os06g03676OsAffx.27443.1.S1_x_at11/116+1437382..1444140SET domain-containing protein, putative, expressed
LOC_Os06g03676Os.44812.1.S1_at11/116+1437382..1444140SET domain-containing protein, putative, expressed
LOC_Os06g03682Os.4465.1.S1_a_at11/116+1444558..1447649Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os06g03682Os.4465.1.S1_s_at11/116+1444558..1447649Calcium-dependent protein kinase, isoform AK1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016559biological_processperoxisome fission
GO:0005778cellular_componentperoxisomal membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4462.1.S1_a_at--1053--3631Chr06:1425675..1425699 (25 bp)
CTTCAGCGGCTATCCAAGTCGATGA
LOC_Os06g03660
Os.4462.1.S1_a_at--349--911Chr06:1425868..1425892 (25 bp)
AGGCGTCTCGCTCTCATCAAATCGA
LOC_Os06g03660
Os.4462.1.S1_a_at--1069--511Chr06:1425888..1425912 (25 bp)
ATCGAGCCTCGACATAGTTGTTGCT
LOC_Os06g03660
Os.4462.1.S1_a_at--283--10711Chr06:1425908..1425932 (25 bp)
TTGCTATAGGGCTGCTTCAACTGGC
LOC_Os06g03660
Os.4462.1.S1_a_at--709--2751Chr06:1425937..1425961 (25 bp)
AAGAAAGTGACTCCGCGTGTGACAG
LOC_Os06g03660
Os.4462.1.S1_a_at--1079--4631Chr06:1425964..1425988 (25 bp)
GCGTTTGGATTTGCTAGCTCACTCA
LOC_Os06g03660
Os.4462.1.S1_a_at--446--1571Chr06:1425979..1426002 (24 bp)
AGCTCACTCATTGCTTGCTATCAGT
LOC_Os06g03660
Os.4462.1.S1_a_at--1160--5431Chr06:1426218..1426242 (25 bp)
GACTTGAAAATCCTTTGTGGGTTAT
LOC_Os06g03660
Os.4462.1.S1_a_at--651--6291Chr06:1426252..1426276 (25 bp)
GATGATCTAGTGGATTGCTGCAGCT
LOC_Os06g03660
Os.4462.1.S1_a_at--742--9191Chr06:1426410..1426434 (25 bp)
TGCCTTGTTCGAGACTGATGAGTGG
LOC_Os06g03660
Os.4462.1.S1_a_at--281--6131Chr06:1426429..1426453 (25 bp)
GAGTGGTTAAATATGCTGTGCTTGC
LOC_Os06g03660
Target Sequence 
CTTCAGCGGCTATCCAAGTCGATGAAGAAACTAGAGAAGGAGCTTAAACACCAGGAGCTGTTAAAGAACGAGCAATACCA
GATGAAACTGCAGAAGTGCAACGAGAGGCGTCTCGCTCTCATCAAATCGAGCCTCGACATAGTTGTTGCTATAGGGCTGC
TTCAACTGGCTCCCAAGAAAGTGACTCCGCGTGTGACAGGGGCGTTTGGATTTGCTAGCTCACTCATTGCTTGCTATCAG
TTGCTCCCAGCCCCAGCCAAATCCAAGTGATCCACCTGAAGGGGTGTCAGTGGGCAGTTCCAATGTTGCAACCAGTAAGA
AATAAAAGTGGAGCTGCTTGATTGACTCATGTGGACTTGAAAATCCTTTGTGGGTTATGGTTAATATGATGATCTAGTGG
ATTGCTGCAGCTGTAATTTTAAGGTGCAGTACTTGTGACAAAAAATAAGAAACTTAGCATGGGAAAAATGTTGCATTGTT
TGCCAATGGTTTAGTGTTGGGACTAGCTAATAAGAACATTGCCATTATATCAACATCTGTTTGTGTGCCTTGTTCGAGAC
TGATGAGTGGTTAAATATGCTGTGCTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4462.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis