Browse Element(s) Details

Os.4465.1.S1_a_at

Description

gb:AK058892.1
DB_XREF= gi:32968910
TID=Os.4465.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.4465 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs AU030197(E50746),AU030196(E50746) correspond to a region of the predicted gene.~Similar to calcium-dependent calmodulin-independent protein kinase CDPK (U90262) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-007-E08, full insert sequence.
FL= gb:AK058892.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g03682	11/11	Calcium-dependent protein kinase, isoform AK1, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g03650	NA	NA	6	+	1420577..1420819	expressed protein
LOC_Os06g03660	Os.4462.1.S1_a_at	11/11	6	+	1422798..1426674	Peroxisomal membrane protein PEX11-1, putative, expressed
LOC_Os06g03670	OsAffx.27442.1.S1_at	11/11	6	+	1433743..1434837	AP2 domain containing protein, expressed
LOC_Os06g03670	Os.4463.1.S1_s_at	11/11	6	+	1433743..1434837	AP2 domain containing protein, expressed
LOC_Os06g03670	Os.57517.1.S1_x_at	1/11	6	+	1433743..1434837	AP2 domain containing protein, expressed
LOC_Os06g03676	OsAffx.27443.1.S1_at	11/11	6	+	1437382..1444140	SET domain-containing protein, putative, expressed
LOC_Os06g03676	OsAffx.27443.1.S1_x_at	11/11	6	+	1437382..1444140	SET domain-containing protein, putative, expressed
LOC_Os06g03676	Os.44812.1.S1_at	11/11	6	+	1437382..1444140	SET domain-containing protein, putative, expressed
LOC_Os06g03682	Os.4465.1.S1_a_at	11/11	6	+	1444558..1447649	Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os06g03682	Os.4465.1.S1_s_at	11/11	6	+	1444558..1447649	Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os06g03690	Os.5600.1.S1_s_at	11/11	6	+	1454386..1457554	RNA recognition motif family protein, expressed
LOC_Os06g03690	OsAffx.27444.1.S1_at	11/11	6	+	1454386..1457554	RNA recognition motif family protein, expressed
LOC_Os06g03700	Os.34161.2.S1_x_at	11/11	6	+	1458769..1463334	oligopeptide transporter 9, putative, expressed
LOC_Os06g03700	Os.34161.1.S1_a_at	11/11	6	+	1458769..1463334	oligopeptide transporter 9, putative, expressed
LOC_Os06g03700	Os.34161.1.S1_at	11/11	6	+	1458769..1463334	oligopeptide transporter 9, putative, expressed
LOC_Os06g03710	Os.31950.1.S1_at	11/11	6	+	1464501..1467594	GRAS family transcription factor containing protein, expressed
LOC_Os06g03720	Os.9043.1.S1_at	11/11	6	+	1469866..1471141	Ribonucleoside-diphosphate reductase small chain, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006468	biological_process	protein amino acid phosphorylation
GO:0005777	cellular_component	peroxisome
GO:0016020	cellular_component	membrane
GO:0004685	molecular_function	calcium- and calmodulin-dependent protein kinase activity
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.4465.1.S1_a_at--1100--1063	1	Chr06:1444801..1444825 (25 bp)	TTCGCTGGTGTGCTAGCATTTTGTT	LOC_Os06g03682
Os.4465.1.S1_a_at--799--413	1	Chr06:1444799..1444823 (25 bp)	CGCTGGTGTGCTAGCATTTTGTTTA	LOC_Os06g03682
Os.4465.1.S1_a_at--178--775	1	Chr06:1444795..1444819 (25 bp)	GGTGTGCTAGCATTTTGTTTATCTG	LOC_Os06g03682
Os.4465.1.S1_a_at--804--869	1	Chr06:1444793..1444817 (25 bp)	TGTGCTAGCATTTTGTTTATCTGTG	LOC_Os06g03682
Os.4465.1.S1_a_at--811--371	1	Chr06:1444789..1444813 (25 bp)	CTAGCATTTTGTTTATCTGTGCAAT	LOC_Os06g03682
Os.4465.1.S1_a_at--1130--1079	1	Chr06:1444781..1444805 (25 bp)	TTGTTTATCTGTGCAATTCACCATG	LOC_Os06g03682
Os.4465.1.S1_a_at--1146--431	1	Chr06:1444712..1444736 (25 bp)	CCTTGCACCTGCGATGCAAGCTGAA	LOC_Os06g03682
Os.4465.1.S1_a_at--388--509	1	Chr06:1444708..1444732 (25 bp)	GCACCTGCGATGCAAGCTGAAAGAT	LOC_Os06g03682
Os.4465.1.S1_a_at--860--175	1	Chr06:1444706..1444730 (25 bp)	ACCTGCGATGCAAGCTGAAAGATAA	LOC_Os06g03682
Os.4465.1.S1_a_at--391--463	1	Chr06:1444702..1444726 (25 bp)	GCGATGCAAGCTGAAAGATAAGAGT	LOC_Os06g03682
Os.4465.1.S1_a_at--799--853	1	Chr06:1444629..1444653 (25 bp)	TGGACCTGATGATATATAATGCTAT	LOC_Os06g03682

Target Sequence

TTCGCTGGTGTGCTAGCATTTTGTTTATCTGTGCAATTCACCATGNTGTCCTGTGGCTGTGAGAGTGCTTCGCTAGTCTC
TTGCCTTCCTCCTTGCACCTGCGATGCAAGCTGAAAGATAAGAGTGAGATGAGTGATGAGATGAGATGAGAGTGTGAGTG
GTAGAATGTAACGTGGACCTGATGATATATAATGCTAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis