Browse Element(s) Details

Os.5600.1.S1_s_at

Description

gb:AU172429
DB_XREF= gi:12622216
DB_XREF=AU172429
CLONE=E0643
TID=Os.5600.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.5600 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_173554.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g03690	11/11	RNA recognition motif family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g03670	OsAffx.27442.1.S1_at	11/11	6	+	1433743..1434837	AP2 domain containing protein, expressed
LOC_Os06g03670	Os.4463.1.S1_s_at	11/11	6	+	1433743..1434837	AP2 domain containing protein, expressed
LOC_Os06g03670	Os.57517.1.S1_x_at	1/11	6	+	1433743..1434837	AP2 domain containing protein, expressed
LOC_Os06g03676	OsAffx.27443.1.S1_at	11/11	6	+	1437382..1444140	SET domain-containing protein, putative, expressed
LOC_Os06g03676	OsAffx.27443.1.S1_x_at	11/11	6	+	1437382..1444140	SET domain-containing protein, putative, expressed
LOC_Os06g03676	Os.44812.1.S1_at	11/11	6	+	1437382..1444140	SET domain-containing protein, putative, expressed
LOC_Os06g03682	Os.4465.1.S1_a_at	11/11	6	+	1444558..1447649	Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os06g03682	Os.4465.1.S1_s_at	11/11	6	+	1444558..1447649	Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os06g03690	Os.5600.1.S1_s_at	11/11	6	+	1454386..1457554	RNA recognition motif family protein, expressed
LOC_Os06g03690	OsAffx.27444.1.S1_at	11/11	6	+	1454386..1457554	RNA recognition motif family protein, expressed
LOC_Os06g03700	Os.34161.2.S1_x_at	11/11	6	+	1458769..1463334	oligopeptide transporter 9, putative, expressed
LOC_Os06g03700	Os.34161.1.S1_a_at	11/11	6	+	1458769..1463334	oligopeptide transporter 9, putative, expressed
LOC_Os06g03700	Os.34161.1.S1_at	11/11	6	+	1458769..1463334	oligopeptide transporter 9, putative, expressed
LOC_Os06g03710	Os.31950.1.S1_at	11/11	6	+	1464501..1467594	GRAS family transcription factor containing protein, expressed
LOC_Os06g03720	Os.9043.1.S1_at	11/11	6	+	1469866..1471141	Ribonucleoside-diphosphate reductase small chain, putative, expressed
LOC_Os06g03740	OsAffx.27445.1.S1_at	11/11	6	+	1475240..1476237	Formimidoyltransferase-cyclodeaminase, putative, expressed
LOC_Os06g03740	OsAffx.27445.1.S1_x_at	11/11	6	+	1475240..1476237	Formimidoyltransferase-cyclodeaminase, putative, expressed
LOC_Os06g03740	OsAffx.27445.2.S1_x_at	7/11	6	+	1475240..1476237	Formimidoyltransferase-cyclodeaminase, putative, expressed
LOC_Os06g03750	Os.44810.1.S1_at	11/11	6	+	1478059..1484508	dehydration-responsive family protein, putative, expressed
LOC_Os06g03750	Os.52574.2.S1_x_at	1/11	6	+	1478059..1484508	dehydration-responsive family protein, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0003676	molecular_function	nucleic acid binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.5600.1.S1_s_at--991--363	1	Chr06:1455676..1455700 (25 bp)	CTTCCACCAGATGCATCAAATACAT	LOC_Os06g03690
Os.5600.1.S1_s_at--167--929	1	Chr06:1455877..1455901 (25 bp)	TTCCGACCATTTGTTGGTTTTCGTG	LOC_Os06g03690
Os.5600.1.S1_s_at--126--585	1	Chr06:1455881..1455905 (25 bp)	GACCATTTGTTGGTTTTCGTGAGGT	LOC_Os06g03690
Os.5600.1.S1_s_at--88--41	1	Chr06:1457366..1457387 (22 bp)	ATCAGGCATGATCACATCGAATGTT	LOC_Os06g03690
Os.5600.1.S1_s_at--958--299	1	Chr06:1457395..1457419 (25 bp)	AATGATGATAGTTCGTTGGTCGCTC	LOC_Os06g03690
Os.5600.1.S1_s_at--882--647	1	Chr06:1457401..1457425 (25 bp)	GATAGTTCGTTGGTCGCTCTAGATA	LOC_Os06g03690
Os.5600.1.S1_s_at--114--781	1	Chr06:1457412..1457436 (25 bp)	GGTCGCTCTAGATATATTACTCCAT	LOC_Os06g03690
Os.5600.1.S1_s_at--618--13	1	Chr06:1457427..1457451 (25 bp)	ATTACTCCATAGTGCTAGGATTGGT	LOC_Os06g03690
Os.5600.1.S1_s_at--1030--111	1	Chr06:1457437..1457461 (25 bp)	AGTGCTAGGATTGGTAACCTTCTGT	LOC_Os06g03690
Os.5600.1.S1_s_at--212--729	1	Chr06:1457482..1457506 (25 bp)	GTGCCTTGGCTTTGTGAGATGCTTT	LOC_Os06g03690
Os.5600.1.S1_s_at--305--1087	1	Chr06:1457487..1457511 (25 bp)	TTGGCTTTGTGAGATGCTTTCTGAC	LOC_Os06g03690

Target Sequence

CTTCCACCAGATGCATCAAATACATTATTCATCGAAGGAATTCCTACTGATGTGCACGTCGAGAAGTTTCTNNNNNCTTC
CGACCATTTGTTGGTTTTCGTGAGGTGAGACTTGNTAAGCAANGAANGCAAGACATCCTGGTGGGGATNCCNATTCTACT
NCTGTTTNGTNGATTTTGAAACTGCTAGTCANAGCTGCTNATTGCTATGGATGNCTNTNTGCANAGGCTACAANTTCGAT
GAACATGATCNGCAATTCACCCCATTTACGGCTCCAGTTTGCTCGTTTTACTGGCCCCAGGGGAGGTTCAGGACCTGGTG
GTGNTCGTGTTAGGCGTTAAGTTGTTCGTCCTNTTTATCAGGCATGATCACATCGAATGTTCAAGTGAAATGATGATAGT
TCGTTGGTCGCTCTAGATATATTACTCCATAGTGCTAGGATTGGTAACCTTCTGTTGTTCCAAGTNCCANCTTTGGTGCC
TTGGCTTTGTGAGATGCTTTCTGAC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis