Browse Element(s) Details

Os.44812.1.S1_at

Description

gb:AK122004.1
DB_XREF= gi:37991627
TID=Os.44812.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.44812 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033110L01, full insert sequence.
FL= gb:AK122004.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g03676	11/11	SET domain-containing protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g03640	Os.10179.1.S1_at	11/11	6	+	1413222..1415364	BAG domain-containing protein, putative, expressed
LOC_Os06g03650	NA	NA	6	+	1420577..1420819	expressed protein
LOC_Os06g03660	Os.4462.1.S1_a_at	11/11	6	+	1422798..1426674	Peroxisomal membrane protein PEX11-1, putative, expressed
LOC_Os06g03670	OsAffx.27442.1.S1_at	11/11	6	+	1433743..1434837	AP2 domain containing protein, expressed
LOC_Os06g03670	Os.4463.1.S1_s_at	11/11	6	+	1433743..1434837	AP2 domain containing protein, expressed
LOC_Os06g03670	Os.57517.1.S1_x_at	1/11	6	+	1433743..1434837	AP2 domain containing protein, expressed
LOC_Os06g03676	OsAffx.27443.1.S1_at	11/11	6	+	1437382..1444140	SET domain-containing protein, putative, expressed
LOC_Os06g03676	OsAffx.27443.1.S1_x_at	11/11	6	+	1437382..1444140	SET domain-containing protein, putative, expressed
LOC_Os06g03676	Os.44812.1.S1_at	11/11	6	+	1437382..1444140	SET domain-containing protein, putative, expressed
LOC_Os06g03682	Os.4465.1.S1_a_at	11/11	6	+	1444558..1447649	Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os06g03682	Os.4465.1.S1_s_at	11/11	6	+	1444558..1447649	Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os06g03690	Os.5600.1.S1_s_at	11/11	6	+	1454386..1457554	RNA recognition motif family protein, expressed
LOC_Os06g03690	OsAffx.27444.1.S1_at	11/11	6	+	1454386..1457554	RNA recognition motif family protein, expressed
LOC_Os06g03700	Os.34161.2.S1_x_at	11/11	6	+	1458769..1463334	oligopeptide transporter 9, putative, expressed
LOC_Os06g03700	Os.34161.1.S1_a_at	11/11	6	+	1458769..1463334	oligopeptide transporter 9, putative, expressed
LOC_Os06g03700	Os.34161.1.S1_at	11/11	6	+	1458769..1463334	oligopeptide transporter 9, putative, expressed
LOC_Os06g03710	Os.31950.1.S1_at	11/11	6	+	1464501..1467594	GRAS family transcription factor containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0030785	molecular_function	[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.44812.1.S1_at--887--195	1	Chr06:1438169..1438193 (25 bp)	ACTGAGTTTGCTTGTGGATCTTCTT	LOC_Os06g03676
Os.44812.1.S1_at--611--493	1	Chr06:1438161..1438184 (24 bp)	GCTTGTGGATCTTCTTAGAGTCAAA	LOC_Os06g03676
Os.44812.1.S1_at--21--901	1	Chr06:1437655..1437679 (25 bp)	TGAAGGATCTCATCGGGTGCGCATT	LOC_Os06g03676
Os.44812.1.S1_at--997--907	1	Chr06:1437621..1437645 (25 bp)	TGCTCTCTAAATTACAGCCGTTAGC	LOC_Os06g03676
Os.44812.1.S1_at--303--451	1	Chr06:1437605..1437629 (25 bp)	GCCGTTAGCCATAGCCAATAGTTAT	LOC_Os06g03676
Os.44812.1.S1_at--433--679	1	Chr06:1437585..1437609 (25 bp)	GTTATGCTACCAATTCAGCTGTTTT	LOC_Os06g03676
Os.44812.1.S1_at--519--339	1	Chr06:1437570..1437594 (25 bp)	CAGCTGTTTTCTTCTGTAGTAGTAG	LOC_Os06g03676
Os.44812.1.S1_at--741--687	1	Chr06:1437555..1437579 (25 bp)	GTAGTAGTAGCGTAACCCTTTTCAG	LOC_Os06g03676
Os.44812.1.S1_at--230--697	1	Chr06:1437549..1437573 (25 bp)	GTAGCGTAACCCTTTTCAGTGATTT	LOC_Os06g03676
Os.44812.1.S1_at--265--467	1	Chr06:1437509..1437533 (25 bp)	GCGTGTGTTACTGTAGCCATTATTT	LOC_Os06g03676
Os.44812.1.S1_at--449--485	1	Chr06:1437443..1437467 (25 bp)	GCTACTACTAATAAAATGCTTCATG	LOC_Os06g03676

Target Sequence

ACTGAGTTTGCTTGTGGATCTTCTTAGAGTCAAAATGACTGAACTTGAAGAGGGCACTGGAACTGAAGCATCTGACAGCC
AACTACTTGAGAAATTCGATCTCAGTGATTCAGAAGACGCAACGAGAAGTGACGAGAGCAACGNGACCAAGTCAAAAGTA
AATATTAGGNCGTGCATAGTGTACCGCAGAGGCCAAAAGCAGCTGACAAAGTTGTTCTTGAGGGAGGCAGAACATCTTCT
GGAGCTGTCGTCAAAAGAAGAGAACTAAAGAAAGCAAGGAATGAAGGATCTCATCGGGTGCGCATTTCCCTTTCNTGCTC
TCTAAATTACAGCCGTTAGCCATAGCCAATAGTTATGCTACCAATTCAGCTGTTTTCTTCTGTAGTAGTAGCGTAACCCT
TTTCAGTGATTTTACTGAAAAGAAAAGGCGTGTGTTACTGTAGCCATTATTTCTTNGGTTTTCAGNAGCTAATTCAATTA
AGAAACAGAAAATTGCTACTACTAATAAAATGCTTCATG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis