Browse Element(s) Details


OsAffx.27443.1.S1_at

Description tigr:9634.m00274
TID=OsAffx.27443.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0367611/11SET domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03640Os.10179.1.S1_at11/116+1413222..1415364BAG domain-containing protein, putative, expressed
LOC_Os06g03650NANA6+1420577..1420819expressed protein
LOC_Os06g03660Os.4462.1.S1_a_at11/116+1422798..1426674Peroxisomal membrane protein PEX11-1, putative, expressed
LOC_Os06g03670OsAffx.27442.1.S1_at11/116+1433743..1434837AP2 domain containing protein, expressed
LOC_Os06g03670Os.4463.1.S1_s_at11/116+1433743..1434837AP2 domain containing protein, expressed
LOC_Os06g03670Os.57517.1.S1_x_at1/116+1433743..1434837AP2 domain containing protein, expressed
LOC_Os06g03676OsAffx.27443.1.S1_at11/116+1437382..1444140SET domain-containing protein, putative, expressed
LOC_Os06g03676OsAffx.27443.1.S1_x_at11/116+1437382..1444140SET domain-containing protein, putative, expressed
LOC_Os06g03676Os.44812.1.S1_at11/116+1437382..1444140SET domain-containing protein, putative, expressed
LOC_Os06g03682Os.4465.1.S1_a_at11/116+1444558..1447649Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os06g03682Os.4465.1.S1_s_at11/116+1444558..1447649Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os06g03690Os.5600.1.S1_s_at11/116+1454386..1457554RNA recognition motif family protein, expressed
LOC_Os06g03690OsAffx.27444.1.S1_at11/116+1454386..1457554RNA recognition motif family protein, expressed
LOC_Os06g03700Os.34161.2.S1_x_at11/116+1458769..1463334oligopeptide transporter 9, putative, expressed
LOC_Os06g03700Os.34161.1.S1_a_at11/116+1458769..1463334oligopeptide transporter 9, putative, expressed
LOC_Os06g03700Os.34161.1.S1_at11/116+1458769..1463334oligopeptide transporter 9, putative, expressed
LOC_Os06g03710Os.31950.1.S1_at11/116+1464501..1467594GRAS family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030785molecular_function[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27443.1.S1_at--794--2811Chr06:1438227..1438251 (25 bp)
AAGATAGAGATGATGAGCTCCGGAG
LOC_Os06g03676
OsAffx.27443.1.S1_at--178--1131Chr06:1438069..1438228 (25 bp)
AGTGCTATATGGGAGCCCTTCTCTT
LOC_Os06g03676
OsAffx.27443.1.S1_at--564--9071Chr06:1438067..1438226 (25 bp)
TGCTATATGGGAGCCCTTCTCTTTT
LOC_Os06g03676
OsAffx.27443.1.S1_at--769--10191Chr06:1438064..1438223 (25 bp)
TATATGGGAGCCCTTCTCTTTTGCA
LOC_Os06g03676
OsAffx.27443.1.S1_at--835--271Chr06:1438063..1438222 (25 bp)
ATATGGGAGCCCTTCTCTTTTGCAA
LOC_Os06g03676
OsAffx.27443.1.S1_at--948--791Chr06:1438061..1438220 (25 bp)
ATGGGAGCCCTTCTCTTTTGCAAGA
LOC_Os06g03676
OsAffx.27443.1.S1_at--818--7631Chr06:1438059..1438080 (22 bp)
GGGAGCCCTTCTCTTTTGCAAGAAT
LOC_Os06g03676
OsAffx.27443.1.S1_at--70--8091Chr06:1438058..1438080 (23 bp)
GGAGCCCTTCTCTTTTGCAAGAATG
LOC_Os06g03676
OsAffx.27443.1.S1_at--940--5871Chr06:1438057..1438080 (24 bp)
GAGCCCTTCTCTTTTGCAAGAATGA
LOC_Os06g03676
OsAffx.27443.1.S1_at--204--1671Chr06:1438056..1438080 (25 bp)
AGCCCTTCTCTTTTGCAAGAATGAC
LOC_Os06g03676
OsAffx.27443.1.S1_at--323--4191Chr06:1438054..1438078 (25 bp)
CCCTTCTCTTTTGCAAGAATGACTG
LOC_Os06g03676
Target Sequence 
AAGATAGAGATGATGAGCTCCGGAGTGCTATATGGGAGCCCTTCTCTTTTGCAAGAATGACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27443.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis