Browse Element(s) Details


OsAffx.27442.1.S1_at

Description gb:NM_185471.1
DB_XREF= gi:34898027
TID=OsAffx.27442.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) Similar to mRNA for DREB1A (AB007787) (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0367011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03640Os.10179.1.S1_at11/116+1413222..1415364BAG domain-containing protein, putative, expressed
LOC_Os06g03650NANA6+1420577..1420819expressed protein
LOC_Os06g03660Os.4462.1.S1_a_at11/116+1422798..1426674Peroxisomal membrane protein PEX11-1, putative, expressed
LOC_Os06g03670OsAffx.27442.1.S1_at11/116+1433743..1434837AP2 domain containing protein, expressed
LOC_Os06g03670Os.4463.1.S1_s_at11/116+1433743..1434837AP2 domain containing protein, expressed
LOC_Os06g03670Os.57517.1.S1_x_at1/116+1433743..1434837AP2 domain containing protein, expressed
LOC_Os06g03676OsAffx.27443.1.S1_at11/116+1437382..1444140SET domain-containing protein, putative, expressed
LOC_Os06g03676OsAffx.27443.1.S1_x_at11/116+1437382..1444140SET domain-containing protein, putative, expressed
LOC_Os06g03676Os.44812.1.S1_at11/116+1437382..1444140SET domain-containing protein, putative, expressed
LOC_Os06g03682Os.4465.1.S1_a_at11/116+1444558..1447649Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os06g03682Os.4465.1.S1_s_at11/116+1444558..1447649Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os06g03690Os.5600.1.S1_s_at11/116+1454386..1457554RNA recognition motif family protein, expressed
LOC_Os06g03690OsAffx.27444.1.S1_at11/116+1454386..1457554RNA recognition motif family protein, expressed
LOC_Os06g03700Os.34161.2.S1_x_at11/116+1458769..1463334oligopeptide transporter 9, putative, expressed
LOC_Os06g03700Os.34161.1.S1_a_at11/116+1458769..1463334oligopeptide transporter 9, putative, expressed
LOC_Os06g03700Os.34161.1.S1_at11/116+1458769..1463334oligopeptide transporter 9, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009409biological_processresponse to cold
GO:0009414biological_processresponse to water deprivation
GO:0009631biological_processcold acclimation
GO:0009686biological_processgibberellic acid biosynthesis
GO:0016049biological_processcell growth
GO:0048510biological_processregulation of timing of transition from vegetative to reproductive phase
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27442.1.S1_at--22--9771Chr06:1434521..1434545 (25 bp)
TAATGGAGATTTTTTCCTTCTTTAT
LOC_Os06g03670
OsAffx.27442.1.S1_at--1104--9531Chr06:1434556..1434580 (25 bp)
TTTTTTCCAAGATAAAATGGCTGAG
LOC_Os06g03670
OsAffx.27442.1.S1_at--833--851Chr06:1434572..1434596 (25 bp)
ATGGCTGAGCTGGTAGGGAGTTCTA
LOC_Os06g03670
OsAffx.27442.1.S1_at--792--1851Chr06:1434616..1434640 (25 bp)
ACGAGATTTGTAATACTACTACGAG
LOC_Os06g03670
OsAffx.27442.1.S1_at--522--311Chr06:1434628..1434652 (25 bp)
ATACTACTACGAGGGACAGCATGCA
LOC_Os06g03670
OsAffx.27442.1.S1_at--842--9891Chr06:1434632..1434656 (25 bp)
TACTACGAGGGACAGCATGCAAAAA
LOC_Os06g03670
OsAffx.27442.1.S1_at--873--8131Chr06:1434641..1434665 (25 bp)
GGACAGCATGCAAAAAAGAAGTATA
LOC_Os06g03670
OsAffx.27442.1.S1_at--1151--5331Chr06:1434658..1434682 (25 bp)
GAAGTATAATTGCTATGCTCTCTCT
LOC_Os06g03670
OsAffx.27442.1.S1_at--1069--1191Chr06:1434660..1434684 (25 bp)
AGTATAATTGCTATGCTCTCTCTCT
LOC_Os06g03670
OsAffx.27442.1.S1_at--841--10171Chr06:1434662..1434686 (25 bp)
TATAATTGCTATGCTCTCTCTCTCT
LOC_Os06g03670
OsAffx.27442.1.S1_at--951--9511Chr06:1434690..1434714 (25 bp)
TCTCTCTTTTGTGTGGAGTGGAATA
LOC_Os06g03670
Target Sequence 
TAATGGAGATTTTTTCCTTCTTTATTTTTTTTATATTTTTTCCAAGATAAAATGGCTGAGCTGGTAGGGAGTTCTAGAAG
GAGGAAATAAAGATTACGAGATTTGTAATACTACTACGAGGGACAGCATGCAAAAAAGAAGTATAATTGCTATGCTCTCT
CTCTCTCTCTCTCTCTTTTGTGTGGAGTGGAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27442.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis