Browse Element(s) Details

OsAffx.27443.1.S1_x_at

Description

tigr:9634.m00274
TID=OsAffx.27443.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g03676	11/11	SET domain-containing protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g03640	Os.10179.1.S1_at	11/11	6	+	1413222..1415364	BAG domain-containing protein, putative, expressed
LOC_Os06g03650	NA	NA	6	+	1420577..1420819	expressed protein
LOC_Os06g03660	Os.4462.1.S1_a_at	11/11	6	+	1422798..1426674	Peroxisomal membrane protein PEX11-1, putative, expressed
LOC_Os06g03670	OsAffx.27442.1.S1_at	11/11	6	+	1433743..1434837	AP2 domain containing protein, expressed
LOC_Os06g03670	Os.4463.1.S1_s_at	11/11	6	+	1433743..1434837	AP2 domain containing protein, expressed
LOC_Os06g03670	Os.57517.1.S1_x_at	1/11	6	+	1433743..1434837	AP2 domain containing protein, expressed
LOC_Os06g03676	OsAffx.27443.1.S1_at	11/11	6	+	1437382..1444140	SET domain-containing protein, putative, expressed
LOC_Os06g03676	OsAffx.27443.1.S1_x_at	11/11	6	+	1437382..1444140	SET domain-containing protein, putative, expressed
LOC_Os06g03676	Os.44812.1.S1_at	11/11	6	+	1437382..1444140	SET domain-containing protein, putative, expressed
LOC_Os06g03682	Os.4465.1.S1_a_at	11/11	6	+	1444558..1447649	Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os06g03682	Os.4465.1.S1_s_at	11/11	6	+	1444558..1447649	Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os06g03690	Os.5600.1.S1_s_at	11/11	6	+	1454386..1457554	RNA recognition motif family protein, expressed
LOC_Os06g03690	OsAffx.27444.1.S1_at	11/11	6	+	1454386..1457554	RNA recognition motif family protein, expressed
LOC_Os06g03700	Os.34161.2.S1_x_at	11/11	6	+	1458769..1463334	oligopeptide transporter 9, putative, expressed
LOC_Os06g03700	Os.34161.1.S1_a_at	11/11	6	+	1458769..1463334	oligopeptide transporter 9, putative, expressed
LOC_Os06g03700	Os.34161.1.S1_at	11/11	6	+	1458769..1463334	oligopeptide transporter 9, putative, expressed
LOC_Os06g03710	Os.31950.1.S1_at	11/11	6	+	1464501..1467594	GRAS family transcription factor containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0030785	molecular_function	[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27443.1.S1_x_at--553--59	1	Chr06:1439097..1439121 (25 bp)	ATGCCGAATTGCGATGTCTTTTACC	LOC_Os06g03676
OsAffx.27443.1.S1_x_at--1010--713	1	Chr06:1439082..1439106 (25 bp)	GTCTTTTACCTCGTAGTTTGCTTGA	LOC_Os06g03676
OsAffx.27443.1.S1_x_at--420--783	1	Chr06:1438975..1438999 (25 bp)	GGTCAACGCAAGGTTCCATCATATA	LOC_Os06g03676
OsAffx.27443.1.S1_x_at--1139--995	1	Chr06:1438916..1438940 (25 bp)	TACCCTGCGTACAATTGCTCTGCAA	LOC_Os06g03676
OsAffx.27443.1.S1_x_at--787--549	1	Chr06:1438891..1438915 (25 bp)	GAACATGAGCTTGAGCATACCGCTT	LOC_Os06g03676
OsAffx.27443.1.S1_x_at--575--357	1	Chr06:1438877..1438900 (24 bp)	CATACCGCTTCATTGCTTGGAGAGA	LOC_Os06g03676
OsAffx.27443.1.S1_x_at--177--113	1	Chr06:1438069..1438228 (25 bp)	AGTGCTATATGGGAGCCCTTCTCTT	LOC_Os06g03676
OsAffx.27443.1.S1_x_at--939--587	1	Chr06:1438057..1438080 (24 bp)	GAGCCCTTCTCTTTTGCAAGAATGA	LOC_Os06g03676
OsAffx.27443.1.S1_x_at--895--759	1	Chr06:1438019..1438043 (25 bp)	GGGCACTGGAACTGAAGCATCTGAC	LOC_Os06g03676
OsAffx.27443.1.S1_x_at--668--497	1	Chr06:1438003..1438027 (25 bp)	GCATCTGACAGCCAACTACTTGAGA	LOC_Os06g03676
OsAffx.27443.1.S1_x_at--677--733	1	Chr06:1437765..1437789 (25 bp)	GTGCATAGTGTACCGCAGAGGCCAA	LOC_Os06g03676

Target Sequence

ATGCCGAATTGCGATGTCTTTTACCTCGTAGTTTGCTTGAAAATGGATTTTTTGGTAGCTGTTCTGGTGAAAACAAGGAG
AACAAAAATAATACAAGTCCTTTTTCTAGTTATAGCTGGAGTGGTCAACGCAAGGTTCCATCATATATCGAGAAAATTGT
TTTCTCTCAGGAATTTATAAGTACCCTGCGTACAATTGCTCTGCAAGAACATGAGCTTGAGCATACCGCTTCATTGCTTG
GAGAGATTGGATCTAATGAAGATAGAGATGATGAGCTCCGGAGTGCTATATGGGAGCCCTTCTCTTTTGCAAGAATGACT
GAACTTGAAGAGGGCACTGGAACTGAAGCATCTGACAGCCAACTACTTGAGAAATTCGATCTCAGTGATTCAGAAGACGC
AACGAGAAGTGACGAGAGCAACGAGACCAAGTCAAAAGTAAATATTAGGACGTGCATAGTGTACCGCAGAGGCCAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis