Browse Element(s) Details

OsAffx.15264.1.S1_at

Description

tigr:9634.m00379
TID=OsAffx.15264.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g04630	11/11	hypothetical protein
LOC_Os04g43650	2/11	aminotransferase, classes I and II family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g04590	OsAffx.27456.1.S1_at	3/11	6	+	1999174..1999570	Auxin responsive protein, expressed
LOC_Os06g04600	Os.15940.1.S1_at	11/11	6	+	1999873..2008069	Brix domain containing protein, expressed
LOC_Os06g04600	Os.15940.2.S1_at	6/11	6	+	1999873..2008069	Brix domain containing protein, expressed
LOC_Os06g04610	Os.5449.1.S2_at	11/11	6	+	2008997..2014660	ribosome-binding factor A, chloroplast precursor, putative, expressed
LOC_Os06g04610	Os.5449.1.S1_at	11/11	6	+	2008997..2014660	ribosome-binding factor A, chloroplast precursor, putative, expressed
LOC_Os06g04620	Os.49218.1.S1_at	11/11	6	+	2016779..2018352	GDP-mannose 4,6 dehydratase 1, putative, expressed
LOC_Os06g04630	OsAffx.15264.1.S1_at	11/11	6	+	2020817..2021420	hypothetical protein
LOC_Os06g04640	Os.11713.2.S1_x_at	11/11	6	+	2022358..2027120	DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os06g04640	Os.11713.2.S1_at	11/11	6	+	2022358..2027120	DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os06g04640	Os.11713.1.S1_x_at	5/11	6	+	2022358..2027120	DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os06g04650	Os.6734.1.S1_at	11/11	6	+	2027123..2029229	Peptide methionine sulfoxide reductase family protein, expressed
LOC_Os06g04660	Os.11678.1.S1_at	11/11	6	+	2029470..2033811	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g04660	Os.11678.2.S1_at	9/11	6	+	2029470..2033811	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g04670	OsAffx.27457.1.S1_at	11/11	6	+	2035772..2036779	CAF1 family ribonuclease containing protein, expressed
LOC_Os06g04670	OsAffx.27457.1.S1_x_at	11/11	6	+	2035772..2036779	CAF1 family ribonuclease containing protein, expressed
LOC_Os06g04680	Os.49667.1.S1_at	10/11	6	+	2038752..2040428	expressed protein
LOC_Os06g04690	Os.3577.2.S1_at	11/11	6	+	2042458..2047358	F-box domain containing protein, expressed
LOC_Os06g04690	Os.3577.1.S1_x_at	9/11	6	+	2042458..2047358	F-box domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0004793	molecular_function	threonine aldolase activity
GO:0016832	molecular_function	aldehyde-lyase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15264.1.S1_at--682--179	1	Chr06:2020880..2020904 (25 bp)	ACCGACCGCGTAGGCTTCGCGTTGA	LOC_Os06g04630
OsAffx.15264.1.S1_at--1125--691	1	Chr06:2020889..2020913 (25 bp)	GTAGGCTTCGCGTTGAGCCACGCCA	LOC_Os06g04630
OsAffx.15264.1.S1_at--1055--363	1	Chr06:2020961..2020985 (25 bp)	CTTCAGGACATCGTCGCTGACGCCG	LOC_Os06g04630
OsAffx.15264.1.S1_at--753--403	1	Chr06:2020984..2021008 (25 bp)	CGTTGACGAGGCAGATGCTGAGCTC	LOC_Os06g04630
OsAffx.15264.1.S1_at--280--93	1	Chr06:2020992..2021016 (25 bp)	AGGCAGATGCTGAGCTCGGCCGCCG	LOC_Os06g04630
OsAffx.15264.1.S1_at--146--995	1	Chr06:2021075..2021162 (25 bp)	TACGCCGCAGGAGGCTTAGGCGCTC	LOC_Os06g04630
OsAffx.15264.1.S1_at--431--445	2	Chr06:2021192..2021259 (25 bp)	GCCTTCATAGAAAAGATGGGATGTA	LOC_Os06g04630
OsAffx.15264.1.S1_at--108--627	2	Chr06:2021254..2021278 (25 bp)	GATGTAACGATGGAAATATGGACTT	LOC_Os06g04630
OsAffx.15264.1.S1_at--64--1011	1	Chr06:2021270..2021294 (25 bp)	TATGGACTTTCAGGCTAAAATTCTT	LOC_Os06g04630
OsAffx.15264.1.S1_at--1146--229	1	Chr06:2021323..2021347 (25 bp)	AAATGGGATTTCTTTGCGCGGCTGC	LOC_Os06g04630
OsAffx.15264.1.S1_at--677--79	1	Chr06:2021325..2021349 (25 bp)	ATGGGATTTCTTTGCGCGGCTGCCT	LOC_Os06g04630

Target Sequence

ACCGACCGCGTAGGCTTCGCGTTGAGCCACGCCAGCGCGCGCGGCGTCCGTGACGGCGCACGCTTCCCCGCCGCGTCCGC
GCTTCAGGACATCGTCGCTGACGCCGTTGACGAGGCAGATGCTGAGCTCGGCCGCCGCTGTGGCAGCCCACGGGAGGACG
CCGTCGAACACCACGGGCCACGGCGTCGGCAGGTCTACGCCGCAGGAGGCTTAGGCGCTCCTGTTGGATCAGTTATTGTT
GGTTCGACGGCCTTCATAGAAAAGATGGGATGTAACGATGGAAATATGGACTTTCAGGCTAAAATTCTTAGGAAGACACT
AGGTGGTGGAATGAGGCAAATGGGATTTCTTTGCGCGGCTGCCT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis