Browse Element(s) Details


OsAffx.15273.1.S1_at

Description tigr:9634.m00476
TID=OsAffx.15273.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=mitogen-activated protein kinase kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0552011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05480Os.5525.1.S1_at11/116+2476594..2477395expressed protein
LOC_Os06g05490NANA6+2481600..2482289hypothetical protein
LOC_Os06g05500NANA6+2483788..2492292transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g05510Os.55293.1.S1_at10/116+2496635..2497203expressed protein
LOC_Os06g05520OsAffx.15273.1.S1_at11/116+2497864..2501888Protein kinase domain containing protein, expressed
LOC_Os06g05520Os.8016.1.S1_a_at11/116+2497864..2501888Protein kinase domain containing protein, expressed
LOC_Os06g05530Os.50965.1.S1_at11/116+2504624..2508041expressed protein
LOC_Os06g05540OsAffx.15274.1.S1_at11/116+2509291..2509872hypothetical protein
LOC_Os06g05550Os.5727.1.S1_at10/116+2514767..2516940GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g05560Os.53045.1.S1_at11/116+2517213..2519939expressed protein
LOC_Os06g05570NANA6+2521000..2521443transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000165biological_processMAPKKK cascade
GO:0009611biological_processresponse to wounding
GO:0009628biological_processresponse to abiotic stimulus
GO:0005737cellular_componentcytoplasm
GO:0004708molecular_functionMAP kinase kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15273.1.S1_at--570--8771Chr06:2499331..2499355 (25 bp)
TGTATACGTGCAAAGCCCAAAATAT
LOC_Os06g05520
OsAffx.15273.1.S1_at--865--10191Chr06:2499309..2499333 (25 bp)
TATATCTTTGGAGCCAGTGCATGCC
LOC_Os06g05520
OsAffx.15273.1.S1_at--289--1131Chr06:2499294..2499318 (25 bp)
AGTGCATGCCAGCAATTTCGTGCTC
LOC_Os06g05520
OsAffx.15273.1.S1_at--1042--5191Chr06:2499283..2499307 (25 bp)
GCAATTTCGTGCTCTCACCAGCAGG
LOC_Os06g05520
OsAffx.15273.1.S1_at--1012--4991Chr06:2499255..2499279 (25 bp)
GCAGGAAACGGATTCTGAATACGGA
LOC_Os06g05520
OsAffx.15273.1.S1_at--815--8891Chr06:2499240..2499264 (25 bp)
TGAATACGGAAAACGTTTCTATGGG
LOC_Os06g05520
OsAffx.15273.1.S1_at--1078--591Chr06:2499212..2499236 (25 bp)
ATGCCCATACCTCACTTTGGAATGC
LOC_Os06g05520
OsAffx.15273.1.S1_at--558--311Chr06:2499206..2499230 (25 bp)
ATACCTCACTTTGGAATGCGCAGGG
LOC_Os06g05520
OsAffx.15273.1.S1_at--362--3031Chr06:2499192..2499216 (25 bp)
AATGCGCAGGGATTGGCCCATCCAA
LOC_Os06g05520
OsAffx.15273.1.S1_at--700--10871Chr06:2499180..2499204 (25 bp)
TTGGCCCATCCAATCACACAGAAAA
LOC_Os06g05520
OsAffx.15273.1.S1_at--443--2071Chr06:2499151..2499175 (25 bp)
ACATTGGAACTGTTCCAGGGAACAA
LOC_Os06g05520
Target Sequence 
TGTATACGTGCAAAGCCCAAAATATATCTTTGGAGCCAGTGCATGCCAGCAATTTCGTGCTCTCACCAGCAGGCCAGCAG
GAAACGGATTCTGAATACGGAAAACGTTTCTATGGGGCCATGCCCATACCTCACTTTGGAATGCGCAGGGATTGGCCCAT
CCAATCACACAGAAAACCAAACATTGGAACTGTTCCAGGGAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15273.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis