Browse Element(s) Details


OsAffx.15320.1.S1_x_at

Description tigr:9634.m00833
TID=OsAffx.15320.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to BT002284 At4g30360F17I23_300
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0885011/11Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g547601/11Cyclic nucleotide-gated ion channel 14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08830OsAffx.15319.1.S1_at10/116+4417695..4419368UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g08840Os.7772.1.S1_at11/116+4427667..4431315RNA recognition motif family protein, expressed
LOC_Os06g08840Os.7772.2.A1_at11/116+4427667..4431315RNA recognition motif family protein, expressed
LOC_Os06g08840Os.7772.2.A1_x_at11/116+4427667..4431315RNA recognition motif family protein, expressed
LOC_Os06g08850Os.26452.1.A1_at11/116+4439849..4441838Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os06g08850OsAffx.15320.1.S1_x_at11/116+4439849..4441838Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os06g08860Os.33759.1.S1_at11/116+4442022..4445511UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative, expressed
LOC_Os06g08870OsAffx.27518.3.S1_x_at11/116+4448305..4448774hypothetical protein
LOC_Os06g08880Os.52182.1.S1_at10/116+4458008..4462883Receptor family ligand binding region containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005216molecular_functionion channel activity
GO:0005261molecular_functioncation channel activity
GO:0005516molecular_functioncalmodulin binding
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15320.1.S1_x_at--51--7151Chr06:4440727..4440751 (25 bp)
GTCTTGTATCTTCCTTGAGCACAGT
LOC_Os06g08850
OsAffx.15320.1.S1_x_at--259--1112Chr06:4440749..4440773 (25 bp)
AGTGGGCACATACATTGTCCGTGAA
LOC_Os06g08850
OsAffx.15320.1.S1_x_at--207--7771Chr06:4440774..4440798 (25 bp)
GGTGACCCAGTGACAGAGATGCTTT
LOC_Os06g08850
OsAffx.15320.1.S1_x_at--533--8111Chr06:4440844..4440868 (25 bp)
GGACGGGCTTCTTCAATTCTATAAC
LOC_Os06g08850
OsAffx.15320.1.S1_x_at--125--3171Chr06:4440898..4440922 (25 bp)
AATTGCTTGGATGGGCTCTTGTTCC
LOC_Os06g08850
OsAffx.15320.1.S1_x_at--114--3151Chr06:4441027..4441051 (25 bp)
AATTCAGGCGGCTCCACAGCAGGAA
LOC_Os06g08850
OsAffx.15320.1.S1_x_at--176--6671Chr06:4441052..4441076 (25 bp)
GTTGCAACACACATTTCGCTACTAC
LOC_Os06g08850
OsAffx.15320.1.S1_x_at--1098--5651Chr06:4441091..4441115 (25 bp)
GACATGGGCCGCTTGTTTCATCCAA
LOC_Os06g08850
OsAffx.15320.1.S1_x_at--511--2871Chr06:4441166..4441190 (25 bp)
AAGGGAGTCATTCTTTTCCAGGAGA
LOC_Os06g08850
OsAffx.15320.1.S1_x_at--831--2791Chr06:4441198..4441222 (25 bp)
AAGATGATGGTTCCCCTGAGCACAG
LOC_Os06g08850
OsAffx.15320.1.S1_x_at--525--3311Chr06:4441218..4441242 (25 bp)
CACAGCCTTGTGTTGAATGCAGTCA
LOC_Os06g08850
Target Sequence 
GTCTTGTATCTTCCTTGAGCACAGTGGGCACATACATTGTCCGTGAAGGTGACCCAGTGACAGAGATGCTTTTTATCATT
CGTGGGAAACTGGAAAGCTCCACTACTGATGGTGGCCGGACGGGCTTCTTCAATTCTATAACGCTCAAAACTGGCGATTT
TTGTGGTGAAGAATTGCTTGGATGGGCTCTTGTTCCCAAGCCTACTGTCAACCTGCCATCCTCCACCAGGACGGTGAAGA
CAATCGTTGAAGTGGAGGCATTTGCCCTCCGAGCTGAAGATCTCAAGTTTGTTGCGAGCCAATTCAGGCGGCTCCACAGC
AGGAAGTTGCAACACACATTTCGCTACTACTCTCACCACTGGAGGACATGGGCCGCTTGTTTCATCCAAGCAGCTTGGCG
CCGCTACAAGAGGAGGAGGCTGGCCAAGGACCTAAGCATAAGGGAGTCATTCTTTTCCAGGAGATCATTCGAAGATGATG
GTTCCCCTGAGCACAGCCTTGTGTTGAATGCAGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15320.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis