Browse Element(s) Details


OsAffx.15339.1.S1_s_at

Description tigr:9634.m00949
TID=OsAffx.15339.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0982011/11Protein of unknown function containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09770NANA6+4973619..4976602hypothetical protein
LOC_Os06g09780NANA6+4978156..4979997retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g09790OsAffx.15337.1.S1_at11/116+4990220..4991150AP2 domain containing protein, expressed
LOC_Os06g09800OsAffx.27539.1.S1_at11/116+4994259..4994861hypothetical protein
LOC_Os06g09810OsAffx.15338.1.S1_at11/116+4997065..4997688AP2 domain containing protein
LOC_Os06g09820OsAffx.15339.1.S1_at11/116+5001346..5003755Protein of unknown function containing protein, expressed
LOC_Os06g09820OsAffx.15339.1.S1_s_at11/116+5001346..5003755Protein of unknown function containing protein, expressed
LOC_Os06g09830Os.9561.1.S1_at11/116+5004425..5007057Protein of unknown function containing protein, expressed
LOC_Os06g09840Os.16603.1.S1_at11/116+5007202..5009735expressed protein
LOC_Os06g09850Os.9168.1.S1_at11/116+5011408..501565325.3 kDa vesicle transport protein, putative, expressed
LOC_Os06g09850OsAffx.25746.1.S1_x_at2/116+5011408..501565325.3 kDa vesicle transport protein, putative, expressed
LOC_Os06g09860Os.8116.1.S1_at11/116+5017089..5019390Leucine Rich Repeat family protein, expressed
LOC_Os06g09870Os.54653.1.S1_at11/116+5022094..5023200transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g09870Os.51848.1.S1_x_at1/116+5022094..5023200transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g09880NANA6+5028396..5034332pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15339.1.S1_s_at--856--3951Chr06:5001865..5001888 (24 bp)
CGGTATTTGAGGTCCATGACGATGG
LOC_Os06g09820
OsAffx.15339.1.S1_s_at--846--2771Chr06:5001690..5001714 (25 bp)
AAGAGACCCTGAACTTCACTACTCT
LOC_Os06g09820
OsAffx.15339.1.S1_s_at--995--1911Chr06:5001609..5001633 (25 bp)
ACGGGAGACCATGAAGACACTTGCT
LOC_Os06g09820
OsAffx.15339.1.S1_s_at--527--5611Chr06:5001594..5001618 (25 bp)
GACACTTGCTCCTAAAGCCGAAGCT
LOC_Os06g09820
OsAffx.15339.1.S1_s_at--1068--1731Chr06:5001559..5001583 (25 bp)
ACCTTGTTCCTTCAGACTGAGTCTG
LOC_Os06g09820
OsAffx.15339.1.S1_s_at--387--7171Chr06:5001539..5001563 (25 bp)
GTCTGAAACCATCACTCCAAGTAGC
LOC_Os06g09820
OsAffx.15339.1.S1_s_at--169--3231Chr06:5001522..5001546 (25 bp)
CAAGTAGCTTGCTCTTCGTGATGAA
LOC_Os06g09820
OsAffx.15339.1.S1_s_at--229--9431Chr06:5001507..5001531 (25 bp)
TCGTGATGAACTTTATGTACCAAGC
LOC_Os06g09820
OsAffx.15339.1.S1_s_at--129--6291Chr06:5001467..5001491 (25 bp)
GATGTTTACTGCTTGATCTGAGATC
LOC_Os06g09820
OsAffx.15339.1.S1_s_at--977--471Chr06:5001452..5001476 (25 bp)
ATCTGAGATCTGTTCAGGACTCGCA
LOC_Os06g09820
OsAffx.15339.1.S1_s_at--1132--6211Chr06:5001414..5001438 (25 bp)
GAGGCCTGAACCTTGCATATATCAT
LOC_Os06g09820
Target Sequence 
CGGTATTTGAGGTCCATGACGATGGACAGATCAAGATGACAGTCGTTGGACCTGATCTACGGCATGGCCAAAGGCCACAA
TACACAGTCCCTCCAAATGTTTGGTTTGGCGCCTTCTTGACCTGCGACATTGAGTCCTTCACCGAAGATGGAAGTGTATT
TGTCAAAACGCCAGGAAGAGACCCTGAACTTCACTACTCTTTCGTCGGTGTAACCTGTGCTCCAGCATTCCAGTTTGAGG
ACAACGAAATGGCAACACGGGAGACCATGAAGACACTTGCTCCTAAAGCCGAAGCTTTCATCAACTACCTTGTTCCTTCA
GACTGAGTCTGAAACCATCACTCCAAGTAGCTTGCTCTTCGTGATGAACTTTATGTACCAAGCTACTGATTCAGTACTGA
TGTTTACTGCTTGATCTGAGATCTGTTCAGGACTCGCAATGCAGAAATCATGAGGCCTGAACCTTGCATATATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15339.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis