Browse Element(s) Details


OsAffx.15368.1.S1_at

Description tigr:9634.m01112
TID=OsAffx.15368.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1139011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11370Os.32942.1.S1_at9/116+5976442..5979609MED6 mediator sub complex component family protein, expressed
LOC_Os06g11380Os.14390.1.S1_at11/116+5981670..5986672kinesin motor protein, putative, expressed
LOC_Os06g11390OsAffx.15368.1.S1_at11/116+6002867..6003975hypothetical protein
LOC_Os06g11400Os.14423.1.S1_at11/116+6006464..6009098expressed protein
LOC_Os06g11400Os.14423.1.S1_x_at9/116+6006464..6009098expressed protein
LOC_Os06g11410Os.14184.1.S1_at11/116+6018598..6020854Cyclin, C-terminal domain containing protein, expressed
LOC_Os06g11420OsAffx.15370.1.S1_at11/116+6026824..6028446SKIP/SNW domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15368.1.S1_at--1048--8571Chr06:6003129..6003153 (25 bp)
TGGTATTGGGAAGGTACTCGTTTCA
LOC_Os06g11390
OsAffx.15368.1.S1_at--212--7851Chr06:6003117..6003141 (25 bp)
GGTACTCGTTTCAAAGGTTGTGCGT
LOC_Os06g11390
OsAffx.15368.1.S1_at--946--7911Chr06:6003102..6003126 (25 bp)
GGTTGTGCGTATTGGCCATAAGCTC
LOC_Os06g11390
OsAffx.15368.1.S1_at--188--9151Chr06:6003097..6003121 (25 bp)
TGCGTATTGGCCATAAGCTCGGTGA
LOC_Os06g11390
OsAffx.15368.1.S1_at--664--10231Chr06:6003093..6003117 (25 bp)
TATTGGCCATAAGCTCGGTGAGGAC
LOC_Os06g11390
OsAffx.15368.1.S1_at--594--2691Chr06:6003083..6003107 (25 bp)
AAGCTCGGTGAGGACATTGAAACAG
LOC_Os06g11390
OsAffx.15368.1.S1_at--287--8611Chr06:6003029..6003053 (25 bp)
TGGTGAGGACCTTGTGCGAGACGCG
LOC_Os06g11390
OsAffx.15368.1.S1_at--772--6231Chr06:6002943..6002967 (25 bp)
GATGGAGGAGCGACAAGAACTACAG
LOC_Os06g11390
OsAffx.15368.1.S1_at--486--5471Chr06:6002927..6002951 (25 bp)
GAACTACAGTTTGATGAACCAGCCA
LOC_Os06g11390
OsAffx.15368.1.S1_at--252--5431Chr06:6002912..6002936 (25 bp)
GAACCAGCCAGTAATGGAGGCCGAG
LOC_Os06g11390
OsAffx.15368.1.S1_at--286--7071Chr06:6002902..6002926 (25 bp)
GTAATGGAGGCCGAGAAGAGCAAAA
LOC_Os06g11390
Target Sequence 
TGGTATTGGGAAGGTACTCGTTTCAAAGGTTGTGCGTATTGGCCATAAGCTCGGTGAGGACATTGAAACAGGGGAAGGTG
ACAAGACGATCGATGCAGGATGGTGAGGACCTTGTGCGAGACGCGGGTTCGAGCGAGGAGTGTGAGGAGGGGTGGAGGAG
CGTGAGGGAGTGGTCGGCTAGGAGGAGATGGAGGAGCGACAAGAACTACAGTTTGATGAACCAGCCAGTAATGGAGGCCG
AGAAGAGCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15368.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis