Browse Element(s) Details


OsAffx.15370.1.S1_at

Description tigr:9634.m01115
TID=OsAffx.15370.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY058079 At1g77180T14N5_5
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1142011/11SKIP/SNW domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11390OsAffx.15368.1.S1_at11/116+6002867..6003975hypothetical protein
LOC_Os06g11400Os.14423.1.S1_at11/116+6006464..6009098expressed protein
LOC_Os06g11400Os.14423.1.S1_x_at9/116+6006464..6009098expressed protein
LOC_Os06g11410Os.14184.1.S1_at11/116+6018598..6020854Cyclin, C-terminal domain containing protein, expressed
LOC_Os06g11420OsAffx.15370.1.S1_at11/116+6026824..6028446SKIP/SNW domain containing protein
LOC_Os06g11430Os.16961.1.S1_at11/116+6031432..6034427GRAM domain-containing protein, putative, expressed
LOC_Os06g11430OsAffx.27566.1.S1_at4/116+6031432..6034427GRAM domain-containing protein, putative, expressed
LOC_Os06g11440Os.7473.1.S1_at11/116+6035702..6049763transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g11440Os.49361.1.S1_at11/116+6035702..6049763transposon protein, putative, Mutator sub-class, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15370.1.S1_at--432--4611Chr06:6028025..6028049 (25 bp)
GCGACGTCAGCGAGAGGATCGCCCT
LOC_Os06g11420
OsAffx.15370.1.S1_at--909--532Chr06:6028042..6028066 (25 bp)
ATCGCCCTGGGCATGGCGAACACCG
LOC_Os06g11420
OsAffx.15370.1.S1_at--601--5851Chr06:6028093..6028117 (25 bp)
GACCAGCGGCTGTTCAACCAGGAGA
LOC_Os06g11420
OsAffx.15370.1.S1_at--757--1171Chr06:6028151..6028175 (25 bp)
AGTACAACGTCTACTCCGGGAGGCT
LOC_Os06g11420
OsAffx.15370.1.S1_at--817--8711Chr06:6028196..6028220 (25 bp)
TGTCGACGCTCTACAAGCCGAGCAA
LOC_Os06g11420
OsAffx.15370.1.S1_at--221--991Chr06:6028229..6028253 (25 bp)
AGGAGGACCCTGACGCCTACGGCGA
LOC_Os06g11420
OsAffx.15370.1.S1_at--950--5931Chr06:6028261..6028285 (25 bp)
GAGCACCTCGGGAAGATTGCCAAGA
LOC_Os06g11420
OsAffx.15370.1.S1_at--690--2751Chr06:6028282..6028306 (25 bp)
AAGACACGCAGGTTCGTGCCCGACA
LOC_Os06g11420
OsAffx.15370.1.S1_at--210--9411Chr06:6028295..6028319 (25 bp)
TCGTGCCCGACAAGGCGTTCACCGG
LOC_Os06g11420
OsAffx.15370.1.S1_at--644--6171Chr06:6028384..6028408 (25 bp)
GAGGAGGATCCGTTCCACCTTGATC
LOC_Os06g11420
OsAffx.15370.1.S1_at--837--7951Chr06:6028389..6028413 (25 bp)
GGATCCGTTCCACCTTGATCAGTTC
LOC_Os06g11420
Target Sequence 
GCGACGTCAGCGAGAGGATCGCCCTGGGCATGGCGAACACCGGCGGCGGCGGCGGCGAGGTCACCTACGACCAGCGGCTG
TTCAACCAGGAGAAGGGAATGGGCTCCGGGTTCGCCGGCGACGACCAGTACAACGTCTACTCCGGGAGGCTCTTCGCGGC
GCAGCCGGCGCTGTCGACGCTCTACAAGCCGAGCAAGCACGGCGAGGAGGACCCTGACGCCTACGGCGACGCCGACGAGC
ACCTCGGGAAGATTGCCAAGACACGCAGGTTCGTGCCCGACAAGGCGTTCACCGGAGCTCCGGCGAGCGTGGCCGCCGGC
AAGAGGGAGAGGCCCGTCGAGTTTGACGGGCCGGAGATGGAGGAGGATCCGTTCCACCTTGATCAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15370.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis