Browse Element(s) Details


OsAffx.15401.1.S1_at

Description tigr:9634.m01292
TID=OsAffx.15401.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AL161535 endoxyloglucan transferase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1304010/11Glycosyl hydrolases family 16 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12990OsAffx.27596.1.S1_at11/116+7118075..7119404expressed protein
LOC_Os06g12990Os.13757.1.S1_at11/116+7118075..7119404expressed protein
LOC_Os06g13000OsAffx.27597.1.S1_at11/116+7120121..7122027Ankyrin repeat protein, chloroplast precursor, putative, expressed
LOC_Os06g13010OsAffx.27598.1.S1_at10/116+7124667..7126893RNase H domain-containing protein, putative, expressed
LOC_Os06g13020OsAffx.983.1.S1_at10/116+7127121..7132516DNA polymerase lambda, putative, expressed
LOC_Os06g13030Os.18748.1.S1_at7/116+7132792..7139004LIM domain containing protein, expressed
LOC_Os06g13040OsAffx.15401.1.S1_at10/116+7143532..7145046Glycosyl hydrolases family 16 protein, expressed
LOC_Os06g13050OsAffx.27599.1.S1_at11/116+7147962..7157823Peroxidase family protein, expressed
LOC_Os06g13050Os.26702.1.A1_s_at4/116+7147962..7157823Peroxidase family protein, expressed
LOC_Os06g13060OsAffx.4821.1.S1_at11/116+7159388..7163157Chaperone protein dnaJ 16, putative, expressed
LOC_Os06g13070OsAffx.15402.1.S1_at11/116+7169698..7171450HhH-GPD superfamily base excision DNA repair protein

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Gene Ontology Classification
GO idTypeName
GO:0009612biological_processresponse to mechanical stimulus
GO:0009645biological_processresponse to low light intensity
GO:0009733biological_processresponse to auxin stimulus
GO:0009826biological_processunidimensional cell growth
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0005576cellular_componentextracellular region
GO:0005618cellular_componentcell wall
GO:0005737cellular_componentcytoplasm
GO:0016762molecular_functionxyloglucan:xyloglucosyl transferase activity
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15401.1.S1_at--1162--8111Chr06:7144374..7144398 (25 bp)
GGACTTCGAGTTCCTTGGCGACAAG
LOC_Os06g13040
OsAffx.15401.1.S1_at--552--1231Chr06:7144366..7144390 (25 bp)
AGTTCCTTGGCGACAAGGATGGCAA
LOC_Os06g13040
OsAffx.15401.1.S1_at--720--8511Chr06:7144236..7144256 (21 bp)
TGGAACCCCTTCCACCTCGTGATAT
LOC_Os06g13040
OsAffx.15401.1.S1_at--773--10671NONE
TTCCACCTCGTGATATTCGTGGACG
NONE
OsAffx.15401.1.S1_at--37--9431Chr06:7143917..7143937 (21 bp)
TCGTGATATTCGTGGACGAGACGCC
LOC_Os06g13040
OsAffx.15401.1.S1_at--230--1831Chr06:7143897..7143921 (25 bp)
ACGCCGGTGAGGGTGCTGAAGAACC
LOC_Os06g13040
OsAffx.15401.1.S1_at--996--6051Chr06:7143849..7143873 (25 bp)
GAGTTCCCGGCGAAGCCTATGCGGC
LOC_Os06g13040
OsAffx.15401.1.S1_at--528--7231Chr06:7143667..7143691 (25 bp)
GTCGCCGGACACGTGGTGGTGGAAC
LOC_Os06g13040
OsAffx.15401.1.S1_at--694--7611Chr06:7143585..7143609 (25 bp)
GGGAACCTGACCTATGACTACTGCA
LOC_Os06g13040
OsAffx.15401.1.S1_at--338--8931Chr06:7143578..7143602 (25 bp)
TGACCTATGACTACTGCACCGACAA
LOC_Os06g13040
OsAffx.15401.1.S1_at--213--5711Chr06:7143570..7143594 (25 bp)
GACTACTGCACCGACAATAGCAAGA
LOC_Os06g13040
Target Sequence 
GGACTTCGAGTTCCTTGGCGACAAGGATGGCAACCCCATCACCCTTCAAACCAACGTCTTCGTCGGCGGCCACGGCGACC
GCGAGCAGCGCCTCCGCCTCTGGTTCGACCCCGCTGCCGACTTCCATGACTACTCCATCCTCTGGAACCCCTTCCACCTC
GTGATATTCGTGGACGAGACGCCGGTGAGGGTGCTGAAGAACCTGACGAGCCGGGGCCCGGAGTTCGAGTTCCCGGCGAA
GCCTATGCGGCCGCGGGGGAGCGTGTGGGACGCCTCCGACTGGGCGACGGACGGCGGCCGGACCAAGGTCGACTGGGCCC
GCGCGCCATTCACCGCGGCCTTCCAGGGCTTCGCCGTCGACGCCTGCGCCGCCGCCGCCGGCGGCGGCGTCAGCTCGGAC
GACTGCGGGTCGCCGGACACGTGGTGGTGGAACGGCGGCGAGTACAGGAGGCTGACGGCGGCGCAGCAGGCGGCGTACGA
TGGCGTGAGGGGGAACCTGACCTATGACTACTGCACCGACAATAGCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15401.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis