Browse Element(s) Details


OsAffx.15441.1.S1_at

Description tigr:9634.m01559
TID=OsAffx.15441.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1555011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g15500NANA6+8794065..8796374retrotransposon protein, putative, unclassified
LOC_Os06g15510NANA6+8797638..8801935transposon protein, putative, unclassified
LOC_Os06g15520Os.28943.1.S1_x_at1/116+8802581..8803516retrotransposon protein, putative, unclassified
LOC_Os06g15530NANA6+8804222..8805571retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g15540NANA6+8809724..8811889retrotransposon protein, putative, unclassified
LOC_Os06g15550OsAffx.15441.1.S1_at11/116+8820963..8822144hypothetical protein
LOC_Os06g15560Os.54514.1.S1_at3/116+8824457..8826102expressed protein
LOC_Os06g15560OsAffx.31349.2.S1_x_at1/116+8824457..8826102expressed protein
LOC_Os06g15570Os.37727.1.S1_at11/116+8825990..8831305retrotransposon protein, putative, unclassified, expressed
LOC_Os06g15580OsAffx.27649.1.S1_at9/116+8832274..8833387hypothetical protein
LOC_Os06g15590OsAffx.27650.1.S1_at11/116+8833949..8834630PGP224, putative
LOC_Os06g15600OsAffx.15442.1.S1_at11/116+8835979..8836908Chemocyanin precursor, putative
LOC_Os06g15610NANA6+8845792..8846093hypothetical protein
LOC_Os06g15620Os.18395.1.S1_s_at11/116+8846990..8847810GAST1 protein precursor, putative, expressed
LOC_Os06g15620Os.48105.1.A1_at11/116+8846990..8847810GAST1 protein precursor, putative, expressed
LOC_Os06g15620OsAffx.27652.1.S1_x_at11/116+8846990..8847810GAST1 protein precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15441.1.S1_at--729--9271Chr06:8821587..8821611 (25 bp)
TCCTGGGCCAAGTCTCATGCCAAGA
LOC_Os06g15550
OsAffx.15441.1.S1_at--798--4391Chr06:8821593..8821617 (25 bp)
GCCAAGTCTCATGCCAAGATGGAGG
LOC_Os06g15550
OsAffx.15441.1.S1_at--1000--911Chr06:8821615..8821639 (25 bp)
AGGAATTCAATTCCACGCCGTACAT
LOC_Os06g15550
OsAffx.15441.1.S1_at--800--7011Chr06:8821634..8821658 (25 bp)
GTACATCTCGCCGTACTCGGAGAGA
LOC_Os06g15550
OsAffx.15441.1.S1_at--471--3811Chr06:8821719..8821743 (25 bp)
CTCCTCTCGCTCACATTGTGGAAAA
LOC_Os06g15550
OsAffx.15441.1.S1_at--811--2331Chr06:8821742..8821766 (25 bp)
AAAGATGTCGGTTCTGAAGCTGGAG
LOC_Os06g15550
OsAffx.15441.1.S1_at--286--7291Chr06:8821826..8821850 (25 bp)
GTGCCTCTTCTACGTCTCAAACAGG
LOC_Os06g15550
OsAffx.15441.1.S1_at--1013--9531Chr06:8821834..8821858 (25 bp)
TCTACGTCTCAAACAGGTACAAGAT
LOC_Os06g15550
OsAffx.15441.1.S1_at--712--9851Chr06:8821851..8821875 (25 bp)
TACAAGATACACACGGTGGTGCTCC
LOC_Os06g15550
OsAffx.15441.1.S1_at--131--692Chr06:8821966..8821990 (25 bp)
ATGAGTATAATCAGCGGCGGCGTTC
LOC_Os06g15550
OsAffx.15441.1.S1_at--797--3911Chr06:8821983..8822007 (25 bp)
CGGCGTTCGGATAATTTGGAGAAGA
LOC_Os06g15550
Target Sequence 
TCCTGGGCCAAGTCTCATGCCAAGATGGAGGAATTCAATTCCACGCCGTACATCTCGCCGTACTCGGAGAGATGGGCGGC
GATAGGCACGGACGCCGACGCCGAGAAGCGAGCGGTGGCGGTGGTGCACGAGCTCCTCTCGCTCACATTGTGGAAAAAGA
TGTCGGTTCTGAAGCTGGAGCATTTCAGGAGGGAGTTCGGGTTGCCGGAGGACACGGCGAGGATGCTGCATCGGCATCCG
TGCCTCTTCTACGTCTCAAACAGGTACAAGATACACACGGTGGTGCTCCGGGAGGGTTACGAGGGGTCGGAGCTTAGGGA
GAAGGATCCGGTGGTAGCGGCGAAGGATAGGCTCGGGGAGCTGATGCAGGAGGGGCTGCATGAGTATAATCAGCGGCGGC
GTTCGGATAATTTGGAGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15441.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis