Browse Element(s) Details


OsAffx.15442.1.S1_at

Description tigr:9634.m01564
TID=OsAffx.15442.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Plastocyanin-like domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1560011/11Chemocyanin precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g15540NANA6+8809724..8811889retrotransposon protein, putative, unclassified
LOC_Os06g15550OsAffx.15441.1.S1_at11/116+8820963..8822144hypothetical protein
LOC_Os06g15560Os.54514.1.S1_at3/116+8824457..8826102expressed protein
LOC_Os06g15560OsAffx.31349.2.S1_x_at1/116+8824457..8826102expressed protein
LOC_Os06g15570Os.37727.1.S1_at11/116+8825990..8831305retrotransposon protein, putative, unclassified, expressed
LOC_Os06g15580OsAffx.27649.1.S1_at9/116+8832274..8833387hypothetical protein
LOC_Os06g15590OsAffx.27650.1.S1_at11/116+8833949..8834630PGP224, putative
LOC_Os06g15600OsAffx.15442.1.S1_at11/116+8835979..8836908Chemocyanin precursor, putative
LOC_Os06g15610NANA6+8845792..8846093hypothetical protein
LOC_Os06g15620Os.18395.1.S1_s_at11/116+8846990..8847810GAST1 protein precursor, putative, expressed
LOC_Os06g15620Os.48105.1.A1_at11/116+8846990..8847810GAST1 protein precursor, putative, expressed
LOC_Os06g15620OsAffx.27652.1.S1_x_at11/116+8846990..8847810GAST1 protein precursor, putative, expressed
LOC_Os06g15630NANA6+8853014..8854636retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g15640Os.1709.1.S1_x_at11/116+8856882..8862471retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g15640Os.31497.2.S1_x_at6/116+8856882..8862471retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009856biological_processpollination
GO:0048653biological_processanther development
GO:0031225cellular_componentanchored to membrane
GO:0048196cellular_componentextracellular matrix (sensu Magnoliophyta)
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15442.1.S1_at--226--9111Chr06:8836826..8836850 (25 bp)
TGCTCCTGTGCCTTGTGGCGGCGGC
LOC_Os06g15600
OsAffx.15442.1.S1_at--126--2771Chr06:8836761..8836785 (25 bp)
AAGACGTACTACGTGGGCGACGCCG
LOC_Os06g15600
OsAffx.15442.1.S1_at--649--1151Chr06:8836175..8836199 (25 bp)
AGTACCACGACGTGGCGGTGGTCGG
LOC_Os06g15600
OsAffx.15442.1.S1_at--392--11Chr06:8836143..8836167 (25 bp)
GGGTACCGGCGGTGCAAGGTGCCGA
LOC_Os06g15600
OsAffx.15442.1.S1_at--374--9011Chr06:8836131..8836155 (25 bp)
TGCAAGGTGCCGAGGAACAAGGACA
LOC_Os06g15600
OsAffx.15442.1.S1_at--178--4651Chr06:8836099..8836123 (25 bp)
GCTGCGGACCGGGTACGACCAGGTG
LOC_Os06g15600
OsAffx.15442.1.S1_at--725--6951Chr06:8836087..8836111 (25 bp)
GTACGACCAGGTGACGCTCCGGCGA
LOC_Os06g15600
OsAffx.15442.1.S1_at--1141--5731Chr06:8836075..8836099 (25 bp)
GACGCTCCGGCGAGGGAACAACTAC
LOC_Os06g15600
OsAffx.15442.1.S1_at--295--9271Chr06:8836070..8836094 (25 bp)
TCCGGCGAGGGAACAACTACTTCAT
LOC_Os06g15600
OsAffx.15442.1.S1_at--270--8371Chr06:8836067..8836091 (25 bp)
GGCGAGGGAACAACTACTTCATCTG
LOC_Os06g15600
OsAffx.15442.1.S1_at--713--1591Chr06:8836010..8836034 (25 bp)
AGCTCGCCGTCAAGGCTCTCTGCTT
LOC_Os06g15600
Target Sequence 
TGCTCCTGTGCCTTGTGGCGGCGGCGCTGCTGATGGAGGCCGTCCCCGCCGCCGAGGCCGGCGGCAAGACGTACTACGTG
GGCGACGCCGCCGGGTGGGGCCGCAACCTCGACTGGTGGCTCGCCGGCAAGACCTTCTACGCCGGCGACGTGCTCGTGTT
CAAGTACAACAAGGAGTACCACGACGTGGCGGTGGTCGGCGGCAAGGGGTACCGGCGGTGCAAGGTGCCGAGGAACAAGG
ACACGGCGGTGCTGCGGACCGGGTACGACCAGGTGACGCTCCGGCGAGGGAACAACTACTTCATCTGCGGCATGCCGGGC
CACTGCGACGCCGGCATGAAGCTCGCCGTCAAGGCTCTCTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15442.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis