Browse Element(s) Details


OsAffx.15474.1.S1_s_at

Description tigr:9634.m01759
TID=OsAffx.15474.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1745011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g17410OsAffx.15472.1.S1_at3/116+10100313..10101516Dof domain, zinc finger family protein, expressed
LOC_Os06g17419OsAffx.9243.1.S1_at1/116+10104233..10104550NA
LOC_Os06g17430OsAffx.27944.1.S1_x_at6/116+10107397..10107660hypothetical protein
LOC_Os06g17430OsAffx.27944.1.S1_at5/116+10107397..10107660hypothetical protein
LOC_Os06g17440Os.12142.1.S1_at11/116+10119999..10123401TMV-MP30 binding protein 2C, putative, expressed
LOC_Os06g17450OsAffx.15474.1.S1_s_at11/116+10125760..10126396expressed protein
LOC_Os06g17460OsAffx.15475.1.S1_at11/116+10130034..10130805Fasciclin domain containing protein
LOC_Os06g17470OsAffx.27686.1.S1_at11/116+10134169..10134609hypothetical protein
LOC_Os06g17480Os.9495.1.S1_at11/116+10136824..10137874Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os06g17480OsAffx.23994.1.S1_x_at1/116+10136824..10137874Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os06g17490Os.52453.1.S1_at11/116+10145844..10148403Protein kinase domain containing protein, expressed
LOC_Os06g17500Os.37806.1.S1_at11/116+10148827..10151293expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15474.1.S1_s_at--344--1151Chr06:10125918..10125942 (25 bp)
AGTCGCCATCGCCAAAGCCATCGAA
LOC_Os06g17450
OsAffx.15474.1.S1_s_at--429--3291Chr06:10125930..10125954 (25 bp)
CAAAGCCATCGAAGAGCACGGCAGC
LOC_Os06g17450
OsAffx.15474.1.S1_s_at--594--491Chr06:10125985..10126009 (25 bp)
ATCGGCACCGAGGAAGGCCGGACCA
LOC_Os06g17450
OsAffx.15474.1.S1_s_at--417--6191Chr06:10125994..10126018 (25 bp)
GAGGAAGGCCGGACCAGCTGCCGCG
LOC_Os06g17450
OsAffx.15474.1.S1_s_at--940--4691Chr06:10126127..10126151 (25 bp)
GCGGCTGACGCCGATTTCTCCGGTG
LOC_Os06g17450
OsAffx.15474.1.S1_s_at--924--4231Chr06:10126176..10126200 (25 bp)
CCGTTGCCGGTGTCGCGGCTGCCAT
LOC_Os06g17450
OsAffx.15474.1.S1_s_at--1042--4011Chr06:10126207..10126231 (25 bp)
CGTCACCTTCTACTAAGATGCCGGA
LOC_Os06g17450
OsAffx.15474.1.S1_s_at--1116--1731Chr06:10126211..10126235 (25 bp)
ACCTTCTACTAAGATGCCGGATGCA
LOC_Os06g17450
OsAffx.15474.1.S1_s_at--726--7551Chr06:10126304..10126328 (25 bp)
GGGCCACATATTTCCTGGTTTTGCT
LOC_Os06g17450
OsAffx.15474.1.S1_s_at--125--2091Chr06:10126309..10126333 (25 bp)
ACATATTTCCTGGTTTTGCTCATCT
LOC_Os06g17450
OsAffx.15474.1.S1_s_at--684--4931Chr06:10126339..10126363 (25 bp)
GCTTGTGCAACATTATGGGGTCGAC
LOC_Os06g17450
Target Sequence 
AGTCGCCATCGCCAAAGCCATCGAAGAGCACGGCAGCTGCCACCCCTGCAAAGGCACCCACCGTCGCATCGGCACCGAGG
AAGGCCGGACCAGCTGCCGCGCCGACGACCACCGTGGCTACCTCCGCGCCTGCTGGTGGCGACGAGGTGTCCATCCCCCC
TACGCCGTTCGCCACCGTGGTGTCTCCCGTCGCCGATGGACCTGCCGATGCGGCTGACGCCGATTTCTCCGGTGCCGGTG
CTCTCAAGAGGTGCGCTGCCGTTGCCGGTGTCGCGGCTGCCATTGCCACCGTCACCTTCTACTAAGATGCCGGATGCAGA
GATGTGGAGTGTCATGGTGAGCTGTTAGGGTGGACAGCAGGAGGAAGGCGTTACTGTCGTTGGGAGGGGCCACATATTTC
CTGGTTTTGCTCATCTCACTTGCTTGTGCAACATTATGGGGTCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15474.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis