Browse Element(s) Details


OsAffx.15475.1.S1_at

Description tigr:9634.m01760
TID=OsAffx.15475.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 137831 endosperm specific protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1746011/11Fasciclin domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g17430OsAffx.27944.1.S1_x_at6/116+10107397..10107660hypothetical protein
LOC_Os06g17430OsAffx.27944.1.S1_at5/116+10107397..10107660hypothetical protein
LOC_Os06g17440Os.12142.1.S1_at11/116+10119999..10123401TMV-MP30 binding protein 2C, putative, expressed
LOC_Os06g17450OsAffx.15474.1.S1_s_at11/116+10125760..10126396expressed protein
LOC_Os06g17460OsAffx.15475.1.S1_at11/116+10130034..10130805Fasciclin domain containing protein
LOC_Os06g17470OsAffx.27686.1.S1_at11/116+10134169..10134609hypothetical protein
LOC_Os06g17480Os.9495.1.S1_at11/116+10136824..10137874Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os06g17480OsAffx.23994.1.S1_x_at1/116+10136824..10137874Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os06g17490Os.52453.1.S1_at11/116+10145844..10148403Protein kinase domain containing protein, expressed
LOC_Os06g17500Os.37806.1.S1_at11/116+10148827..10151293expressed protein
LOC_Os06g17510OsAffx.15476.1.S1_at10/116+10154244..10155769hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15475.1.S1_at--743--4791Chr06:10130087..10130111 (25 bp)
GCTCCTCTGCGTGTCAGTGATGTCA
LOC_Os06g17460
OsAffx.15475.1.S1_at--447--7451Chr06:10130097..10130121 (25 bp)
GTGTCAGTGATGTCACCACCCTTCA
LOC_Os06g17460
OsAffx.15475.1.S1_at--219--1051Chr06:10130372..10130396 (25 bp)
AGGTGAACACGCTGGCCACCGACGG
LOC_Os06g17460
OsAffx.15475.1.S1_at--558--6171Chr06:10130402..10130426 (25 bp)
GAGGAGGCAAGGTCTTGAACCTCAC
LOC_Os06g17460
OsAffx.15475.1.S1_at--132--8091Chr06:10130452..10130476 (25 bp)
GGAGCCACCGTGAAACTGTCGTCGT
LOC_Os06g17460
OsAffx.15475.1.S1_at--86--7391Chr06:10130497..10130521 (25 bp)
GTGACCAAGACGATCCAGGACGCGG
LOC_Os06g17460
OsAffx.15475.1.S1_at--352--4091Chr06:10130544..10130568 (25 bp)
CGACGCCGTGCTAATGCCATTGGAT
LOC_Os06g17460
OsAffx.15475.1.S1_at--885--8551Chr06:10130564..10130588 (25 bp)
TGGATGTGGTGGTCAACGTCTCTTC
LOC_Os06g17460
OsAffx.15475.1.S1_at--925--10631Chr06:10130670..10130694 (25 bp)
TTCGCCGGACAGCAAGCCCGACAAT
LOC_Os06g17460
OsAffx.15475.1.S1_at--32--5951Chr06:10130707..10130731 (25 bp)
GAGCAGCCTCCGGAGAACAGCGCGA
LOC_Os06g17460
OsAffx.15475.1.S1_at--173--5011Chr06:10130741..10130765 (25 bp)
GCATGGCAGCGTGGAGTCTGCTCTC
LOC_Os06g17460
Target Sequence 
GCTCCTCTGCGTGTCAGTGATGTCACCACCCTTCACACCTGCATCGGCGAGTCCCATGGGCCTCACCGCCGACGCGAAGG
TGGCGCTCCTGCTGTACCACGCCGTCGCGGCGCACTTCTCCGAGGAGGCGCTCAAGGCGATCAACGGGGAGGTGAACACG
CTGGCCACCGACGGCGGCGGAGGAGGCAAGGTCTTGAACCTCACCATCGAGGAGGACGACGACGGCGCCGGAGCCACCGT
GAAACTGTCGTCGTCGTCCGGGAACGTGGCGCGGGTGACCAAGACGATCCAGGACGCGGACCCCCACGCCGTGTACCTCA
TCGACGCCGTGCTAATGCCATTGGATGTGGTGGTCAACGTCTCTTCCGGCGGCGGCGCGGCTGCCCCTTCACCGGCGCCG
GTCACTTCACCTGCACCCGCACCTGCTCAGGCCACAAATCCGTCCCCTTCGCCGGACAGCAAGCCCGACAATCAGCCGGC
CGCGGAGCAGCCTCCGGAGAACAGCGCGAGCAGGGGCGGCATGGCAGCGTGGAGTCTGCTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15475.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis