Browse Element(s) Details


OsAffx.15562.1.S1_s_at

Description tigr:9634.m02249
TID=OsAffx.15562.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2287011/11Auxin-responsive protein IAA8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22840OsAffx.17770.1.S1_x_at1/116+13321640..13323037hypothetical protein
LOC_Os06g22850OsAffx.4905.1.S1_at11/116+13326935..13327407Microfibrillar-associated protein 1, putative
LOC_Os06g22860Os.22949.1.S1_at2/116+13334913..13336356hypothetical protein
LOC_Os06g22870OsAffx.15562.1.S1_s_at11/116+13344334..13348183Auxin-responsive protein IAA8, putative, expressed
LOC_Os06g22870Os.7687.1.S1_at10/116+13344334..13348183Auxin-responsive protein IAA8, putative, expressed
LOC_Os06g22880OsAffx.15563.1.S1_at11/116+13361904..13362250hypothetical protein
LOC_Os06g22890Os.26886.6.S1_s_at7/116+13365401..13368654transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g22890Os.26886.2.S1_s_at6/116+13365401..13368654transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g22890OsAffx.16467.1.S1_at1/116+13365401..13368654transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g22900Os.26886.3.S1_x_at4/116+13370229..13374235transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g22900OsAffx.3774.1.S1_at1/116+13370229..13374235transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006445biological_processregulation of translation
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15562.1.S1_s_at--124--2371Chr06:13344408..13344432 (25 bp)
AAAGCCAAGCCAAGCTTGAAGCTCC
LOC_Os06g22870
OsAffx.15562.1.S1_s_at--832--3231Chr06:13344418..13344442 (25 bp)
CAAGCTTGAAGCTCCCCGCACTGAG
LOC_Os06g22870
OsAffx.15562.1.S1_s_at--746--2691Chr06:13344426..13344450 (25 bp)
AAGCTCCCCGCACTGAGCCAAGAAG
LOC_Os06g22870
OsAffx.15562.1.S1_s_at--178--2751Chr06:13344445..13344469 (25 bp)
AAGAAGCCTCCACCTCAATCCGAAA
LOC_Os06g22870
OsAffx.15562.1.S1_s_at--883--4451Chr06:13344450..13344474 (25 bp)
GCCTCCACCTCAATCCGAAAGAGAT
LOC_Os06g22870
OsAffx.15562.1.S1_s_at--1146--3031Chr06:13344461..13344485 (25 bp)
AATCCGAAAGAGATCTCGTGCGCGC
LOC_Os06g22870
OsAffx.15562.1.S1_s_at--209--9291Chr06:13344463..13344487 (25 bp)
TCCGAAAGAGATCTCGTGCGCGCAC
LOC_Os06g22870
OsAffx.15562.1.S1_s_at--325--5571Chr06:13344466..13344490 (25 bp)
GAAAGAGATCTCGTGCGCGCACGGC
LOC_Os06g22870
OsAffx.15562.1.S1_s_at--60--3351Chr06:13344485..13344509 (25 bp)
CACGGCGATGCGGTGAATCGGGCAT
LOC_Os06g22870
OsAffx.15562.1.S1_s_at--724--4171Chr06:13344515..13344539 (25 bp)
CGCCACAGGAGCGGGACTACATCGG
LOC_Os06g22870
OsAffx.15562.1.S1_s_at--1017--611Chr06:13344644..13344668 (25 bp)
ATGCGGCTCCGCTGACGCTCGAGCT
LOC_Os06g22870
Target Sequence 
AAAGCCAAGCCAAGCTTGAAGCTCCCCGCACTGAGCCAAGAAGCCTCCACCTCAATCCGAAAGAGATCTCGTGCGCGCAC
GGCGATGCGGTGAATCGGGCATGGCGCCGCCACAGGAGCGGGACTACATCGGGCTGTCGCCGGCGGCGGCGGCGGCGCTG
GCAACGGAGCTGCGCCCTTGGGCTGCCGGGGACTGCGGAGAAGCCTAAGTCGAAGGCCGGCGGAGGAGGAGGGACGAATG
CGGCTCCGCTGACGCTCGAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15562.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis