Browse Element(s) Details


OsAffx.15666.1.S1_at

Description tigr:9634.m02845
TID=OsAffx.15666.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2964011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g29600NANA6+16974086..16978325retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g29609NANA6+16980730..16981428NA
LOC_Os06g29620OsAffx.4962.1.S1_at11/116+16982851..16983159hypothetical protein
LOC_Os06g29630Os.10828.1.S1_at11/116+16990724..16993088AC transposase, putative, expressed
LOC_Os06g29630Os.51987.1.S1_s_at11/116+16990724..16993088AC transposase, putative, expressed
LOC_Os06g29630Os.51987.1.S1_at11/116+16990724..16993088AC transposase, putative, expressed
LOC_Os06g29630OsAffx.12779.1.A1_x_at1/116+16990724..16993088AC transposase, putative, expressed
LOC_Os06g29640OsAffx.15666.1.S1_at11/116+16998917..16999911hypothetical protein
LOC_Os06g29650Os.53145.1.S1_at11/116+17002690..17009233CDP-diacylglycerol-inositol 3-phosphatidyltransferase 1, putative, expressed
LOC_Os06g29660OsAffx.8864.1.S1_at8/116+17010286..17011694retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g29670OsAffx.15667.1.S1_at6/116+17019713..17020078hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15666.1.S1_at--915--3031Chr06:16999139..16999163 (25 bp)
AATCCTTTCCCCTATGACCACTATG
LOC_Os06g29640
OsAffx.15666.1.S1_at--528--4371Chr06:16999156..16999180 (25 bp)
CCACTATGCCCGGTTCTATAAAGAT
LOC_Os06g29640
OsAffx.15666.1.S1_at--958--10131Chr06:16999408..16999432 (25 bp)
TATGCTCTCTATATCATGCGCTTGA
LOC_Os06g29640
OsAffx.15666.1.S1_at--628--9011Chr06:16999526..16999550 (25 bp)
TGCACCAACCTATCTTTGATCAAGG
LOC_Os06g29640
OsAffx.15666.1.S1_at--525--8571Chr06:16999581..16999605 (25 bp)
TGGATATGATCCCAATACCTTCTTC
LOC_Os06g29640
OsAffx.15666.1.S1_at--282--4831Chr06:16999698..16999722 (25 bp)
GCTCACCACCGGACATGAAGCCATG
LOC_Os06g29640
OsAffx.15666.1.S1_at--975--3511Chr06:16999711..16999735 (25 bp)
CATGAAGCCATGTACGAGGATGTGC
LOC_Os06g29640
OsAffx.15666.1.S1_at--699--6851Chr06:16999739..16999763 (25 bp)
GTTTGCATTCGAATGTTGGTGGCCT
LOC_Os06g29640
OsAffx.15666.1.S1_at--433--731Chr06:16999751..16999775 (25 bp)
ATGTTGGTGGCCTGAATGAGTCCGT
LOC_Os06g29640
OsAffx.15666.1.S1_at--731--2971Chr06:16999821..16999845 (25 bp)
AATGTTGGAAAGCACCCATGCCTTT
LOC_Os06g29640
OsAffx.15666.1.S1_at--590--591Chr06:16999838..16999862 (25 bp)
ATGCCTTTGTGTATCACCGTCGCCG
LOC_Os06g29640
Target Sequence 
AATCCTTTCCCCTATGACCACTATGCCCGGTTCTATAAAGATGGGGAAGGCACACCTATGGGAAGGTGGCGGGGGACATT
TGGACAAGGCATCTACTATGCTCTCTATATCATGCGCTTGATTCAAAGAAAGTTGGGGCATGCTGGAGATAATTTGAAAG
AACACAAGGAGGATAAGCCTCGCCGCCAACTTTCCATTCCTAGAGCTCCCCAAGTGCACCAACCTATCTTTGATCAAGGC
GCAAGCACAAGTGCGGCACCTCCTCCTCATGGATATGATCCCAATACCTTCTTCCATCCTCAATATGCATATTTTAGGAT
ACAACCAAATGAATATTTCAACCCGGTGCTTAGGGCCATCAATACCCTAAGTGAAAACATCCAAAGGCTCACCACCGGAC
ATGAAGCCATGTACGAGGATGTGCGTGGTTTGCATTCGAATGTTGGTGGCCTGAATGAGTCCGTGGGGAGATTGAGCACA
AGGGTGGGAGTGTTGGATCAAAGGGTTCAAATGTTGGAAAGCACCCATGCCTTTGTGTATCACCGTCGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15666.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis