Browse Element(s) Details


OsAffx.15667.1.S1_at

Description tigr:9634.m02848
TID=OsAffx.15667.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g296706/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g29640OsAffx.15666.1.S1_at11/116+16998917..16999911hypothetical protein
LOC_Os06g29650Os.53145.1.S1_at11/116+17002690..17009233CDP-diacylglycerol-inositol 3-phosphatidyltransferase 1, putative, expressed
LOC_Os06g29660OsAffx.8864.1.S1_at8/116+17010286..17011694retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g29670OsAffx.15667.1.S1_at6/116+17019713..17020078hypothetical protein
LOC_Os06g29680NANA6+17028104..17028559hypothetical protein
LOC_Os06g29690OsAffx.27867.1.S1_s_at11/116+17034117..17035896Dynein light chain type 1 family protein, expressed
LOC_Os06g29700OsAffx.27868.1.S1_at10/116+17043280..17045348F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15667.1.S1_at--390--4334Chr01:7792626..7792650 (25 bp)
CCATCTTCAAAACGTGATTCGATAA
NONE
OsAffx.15667.1.S1_at--171--352Chr01:7792647..7792671 (25 bp)
ATAAAATGCCAACCTCAAGCCTACG
NONE
OsAffx.15667.1.S1_at--893--2631Chr06:17020182..17020206 (25 bp)
AAGCCTACGCTACTCGCCGGATTGC
NONE
OsAffx.15667.1.S1_at--569--7931Chr06:17020164..17020188 (25 bp)
GGATTGCCATCTTCTTATTTTCTCT
NONE
OsAffx.15667.1.S1_at--765--10691Chr06:17020123..17020147 (25 bp)
TTGCCTCTTTCTCATGGTAATCAGA
NONE
OsAffx.15667.1.S1_at--953--7331Chr06:17019885..17019909 (25 bp)
GTGACGGCAGGAGCAACGCTGATAT
LOC_Os06g29670
OsAffx.15667.1.S1_at--321--8071Chr06:17019859..17019883 (25 bp)
GGAGCAGATGCATCATCATCGTCTT
LOC_Os06g29670
OsAffx.15667.1.S1_at--742--9571Chr06:17019838..17019862 (25 bp)
TCTTCCTCTCTAGGCGGTGGGACGT
LOC_Os06g29670
OsAffx.15667.1.S1_at--222--271Chr06:17019806..17019830 (25 bp)
ATATGTGGTGAAGACTGCTCCGCCG
LOC_Os06g29670
OsAffx.15667.1.S1_at--198--1851Chr06:17019778..17019802 (25 bp)
ACGCAAGGGACTGCGGCGGATACTC
LOC_Os06g29670
OsAffx.15667.1.S1_at--791--991Chr06:17019746..17019770 (25 bp)
AGGATGTGTCAGTGGCCATGTTGAC
LOC_Os06g29670
Target Sequence 
CCATCTTCAAAACGTGATTCGATAAAATGCCAACCTCAAGCCTACGCTACTCGCCGGATTGCCATCTTCTTATTTTCTCT
TATTTCCAAAATATTTTTGCCTCTTTCTCATGGTAATCAGACGAAAATACCCTCCGCCTCCCCTTCTCTTCACCACGTGC
ACACCATGGCACTCTGCCCACTCACCGACACCCACCGTGCTCTCCCTTCGCTGCCACCACCGTGCTCTCCCTCCGCTGCC
ACCACCGTCGCTCCCCTTCTTCCCACCCCTCCTCCGTTCCTCTCTAGCCTCTCCTCCGCGTGCATCTGTGCCCTCCTGGA
CGCCACCAACGGGAGTGACGGCAGGAGCAACGCTGATATAGGAGCAGATGCATCATCATCGTCTTCCTCTCTAGGCGGTG
GGACGTCGCGGGAATATGTGGTGAAGACTGCTCCGCCGGCGACGCAAGGGACTGCGGCGGATACTCGAGGAGGAGGATGT
GTCAGTGGCCATGTTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15667.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis